View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15584_high_8 (Length: 352)
Name: NF15584_high_8
Description: NF15584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15584_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 60 - 331
Target Start/End: Original strand, 31541573 - 31541835
Alignment:
| Q |
60 |
gaaggaatgtaaattgtaattgtaatatgaatagaggtggatcatggaccaatatatatatnnnnnnnnnnnnnnnnngatgatcttaaattaattatta |
159 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31541573 |
gaaggaatgtaaattgcaattgtaatatgaatagaggtggatcatggaccaatatatatataaaaaaa----------gatgatcttaaattaattatta |
31541662 |
T |
|
| Q |
160 |
acgaggctgaaccc-ttttcaagctactgttcccattagcactattgttaacacttaacagagtataccatcaactattataggctgtaaagagagagca |
258 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31541663 |
acgaggttgaaccccttttcaagccactgttcccattagcattattgttaacacttaacagagtataccatcaactattataggctgtaaagagagaaca |
31541762 |
T |
|
| Q |
259 |
acaatataatgcgatcaaagatcacttaatttgattacttttcccatcaaatttttcatgaaaaatctaagag |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31541763 |
acaatataatgcgatcaaagatcacttaatttgattgcttttcccatcaaatttttcatgaaaaatctaagag |
31541835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University