View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15584_low_2 (Length: 303)
Name: NF15584_low_2
Description: NF15584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15584_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 109 - 286
Target Start/End: Complemental strand, 37348733 - 37348556
Alignment:
| Q |
109 |
ataatttacgatcaagtgtcaagtagtactttgtaaattgaccgcaattatagcaccaatgaaaaagaagtaagagaaagatgtagtatttttcaattgc |
208 |
Q |
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| T |
37348733 |
ataatttacgatcaagtgtcaagtagtactttgtaaattgaccgcaattatatcaccaatgaaaaagaagtaagagaaagatgtagtatttttcaattgc |
37348634 |
T |
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| Q |
209 |
aaccattttcaaatgcaacaaaactctttattggagccaacatacacaaagacaggagtatatactagcaaattattg |
286 |
Q |
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| T |
37348633 |
aaccattttcaaatgcaacaaaactctttattggagccaacatactcaacgacaggagtatatactagcaaattattg |
37348556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 37350367 - 37350264
Alignment:
| Q |
13 |
gagatgaaccaacataaaaggggggatcatcacccatgttaaatagtgaggataaagagaagaacaaaaccaacaagaaattcaaaccaaaccaatataa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37350367 |
gagatgaaccaacataaaaggggggatcatcacccatgttaaatagtgaggataaagagaagaacaaaaccaacaagaaattcaaaccaaaccaatataa |
37350268 |
T |
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| Q |
113 |
ttta |
116 |
Q |
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|||| |
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| T |
37350267 |
ttta |
37350264 |
T |
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