View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15585_high_3 (Length: 369)
Name: NF15585_high_3
Description: NF15585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15585_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 351
Target Start/End: Complemental strand, 51112252 - 51111910
Alignment:
| Q |
9 |
agcagagaagaccaaagattatggaagtgatgctgcacagaaggccaaagatgcagcatacaagactaaagactatgctggtgatgctgctgagaagacc |
108 |
Q |
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| T |
51112252 |
agcagagaagaccaaagattatggaagtgatgctgcacagaaggcaaaagatgcagcatacaagactaaagactatgctggtgatgctgccgagaagacc |
51112153 |
T |
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| Q |
109 |
aaagatgcagcacacaagaccaaagattatgcgggtgatgctacagaaaagacaagagaatatgccaatgctgcagcatacaagtctaaagactatgcag |
208 |
Q |
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| T |
51112152 |
aaagatgcagcatacaagaccaaagattatgcgggtgatgctacagaaaagacaagagaatatgccaatgctgcagcatacaagtctaaagactatgcag |
51112053 |
T |
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| Q |
209 |
gtgatgctgcagagaagaccaaagatgcagcatataagaccaaagactatgctggtgaagctgcacaaaaagccaaagattatgcaggtgatgctgctca |
308 |
Q |
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| T |
51112052 |
gtgatgctgcagagaagaccaaagatgcagcatataagaccaaagactatgctggtgaagctgcacaaaaagccaaagattatgcaggtgatgctgctca |
51111953 |
T |
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| Q |
309 |
caatactagagagtatgccaatgatgcagcatacaaatctaaa |
351 |
Q |
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| T |
51111952 |
caatactagagagtatgccaatgatgcagcatacaaatctaaa |
51111910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 58 - 266
Target Start/End: Complemental strand, 51112344 - 51112115
Alignment:
| Q |
58 |
gatgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaagatgcagcacacaagaccaaagattatgcgggtgatgctacagaaa |
157 |
Q |
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| T |
51112344 |
gatgcagcatacaagtctaaagagtatgctggtgatgctgcacagatggccaaagatgcagcatacaagaccaaagattatgcaggtgatgcagcagaga |
51112245 |
T |
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| Q |
158 |
agacaagagaatatgcca---atgctgca------------------gcatacaagtctaaagactatgcaggtgatgctgcagagaagaccaaagatgc |
236 |
Q |
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| T |
51112244 |
agaccaaagattatggaagtgatgctgcacagaaggcaaaagatgcagcatacaagactaaagactatgctggtgatgctgccgagaagaccaaagatgc |
51112145 |
T |
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| Q |
237 |
agcatataagaccaaagactatgctggtga |
266 |
Q |
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| T |
51112144 |
agcatacaagaccaaagattatgcgggtga |
51112115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 305
Target Start/End: Complemental strand, 51112410 - 51112217
Alignment:
| Q |
112 |
gatgcagcacacaagaccaaagattatgcgggtgatgctacagaaaagacaagagaatatgccaatgctgcagcatacaagtctaaagactatgcaggtg |
211 |
Q |
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| T |
51112410 |
gatgctgcacagaaaaccaaagactatgctggtggtgctactcagaagagcaaagagtatgcaactgatgcagcatacaagtctaaagagtatgctggtg |
51112311 |
T |
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| Q |
212 |
atgctgcagagaagaccaaagatgcagcatataagaccaaagactatgctggtgaagctgcacaaaaagccaaagattatgcaggtgatgctgc |
305 |
Q |
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| T |
51112310 |
atgctgcacagatggccaaagatgcagcatacaagaccaaagattatgcaggtgatgcagcagagaagaccaaagattatggaagtgatgctgc |
51112217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 51112313 - 51112234
Alignment:
| Q |
35 |
gtgatgctgcacagaaggccaaagatgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaagat |
114 |
Q |
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| T |
51112313 |
gtgatgctgcacagatggccaaagatgcagcatacaagaccaaagattatgcaggtgatgcagcagagaagaccaaagat |
51112234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 51111980 - 51111890
Alignment:
| Q |
128 |
ccaaagattatgcgggtgatgctacagaaaagacaagagaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgc |
218 |
Q |
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| T |
51111980 |
ccaaagattatgcaggtgatgctgctcacaatactagagagtatgccaatgatgcagcatacaaatctaaagactatgcaggtgatgctgc |
51111890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 351
Target Start/End: Complemental strand, 51112522 - 51112324
Alignment:
| Q |
165 |
agaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgcagagaagaccaaaga---tgcag---------catataagaccaaa |
252 |
Q |
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| T |
51112522 |
agaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaaaaccaaagagtatgcaggtgatgctacagagaagaccaaa |
51112423 |
T |
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| Q |
253 |
gactatgctggtgaagctgcacaaaaagccaaagattatgcaggtgatgctgctcacaatactagagagtatgccaatgatgcagcatacaaatctaaa |
351 |
Q |
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| T |
51112422 |
gagtatgcaggcgatgctgcacagaaaaccaaagactatgctggtggtgctactcagaagagcaaagagtatgcaactgatgcagcatacaagtctaaa |
51112324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 51111936 - 51111875
Alignment:
| Q |
52 |
gccaaagatgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaaga |
113 |
Q |
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| T |
51111936 |
gccaatgatgcagcatacaaatctaaagactatgcaggtgatgctgctcaaaaaaccaaaga |
51111875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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