View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15585_low_1 (Length: 479)
Name: NF15585_low_1
Description: NF15585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15585_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 30702710 - 30702254
Alignment:
| Q |
18 |
acctcataaattaaataacaaacaacataatttaactcatgtatgatcaattaattttaacaaaaatcatgagattggtggtacctgcaatatagtatga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30702710 |
acctcataaattaaataacaaacaacataatttaactcatgcatgatcaattaattttaacaaaaatcatgagattggtggtacctgcaatatagtatga |
30702611 |
T |
|
| Q |
118 |
ctgtgagtgctgctgaatatttgggatgacaacttctgtcctcaaactatcaagatcttgtaaataatttgaacaatatgtattataaatggtagtagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30702610 |
ctgtgagtgctgctgaatatttgggatgacaacttctgtcctcaaactatcaagatcttgtaaataatttgaacaatatgtattataaatggtagtagaa |
30702511 |
T |
|
| Q |
218 |
tcaacaataccattcttatgatttccatgatgaagatgatgataatctacagcattatgatcaggtgtttctgctctaactttcccttgaggttgcactt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30702510 |
tcaacaataccattcttatgatttccatgatgaagatgatgataatctacagcattatgatcaggtgtttctgctctaactttcccttgaggttgcactt |
30702411 |
T |
|
| Q |
318 |
gcaccaattggttttggtgatctctaaacatcttaagttcatcaaataatcttttatactcattgtaaacttttgtatactctccataagaaccatttat |
417 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30702410 |
gcaccaattggttttgatgatctctaaacatcttaagttcatcaaataatcttttatactcattgtaaacttttgtatactctccataagaaccatttat |
30702311 |
T |
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| Q |
418 |
tggatccttttgcctagaaagtgcttcccatatcaatgaatccacaacttttcttct |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30702310 |
tggatccttttgcctagaaagtgcttcccatatcaatgaatccacaacttttcttct |
30702254 |
T |
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