View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15585_low_2 (Length: 435)
Name: NF15585_low_2
Description: NF15585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15585_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 26127296 - 26126891
Alignment:
| Q |
17 |
catattgcatcagttaaagaggaaagagctggaccttttggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaatccgtgaacccga |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26127296 |
catattgcatcagttaaagaggaaaaagctggaccttttggtactgtcaaggcattaagaaccaatcctaatgttgctcctgatgaatccgtgaacccga |
26127197 |
T |
|
| Q |
117 |
gattggcaaatttattagagaaaatagcagttaaccgagagatcatagttgcccttgcaaactccaatgttaaggaaaccctcgaggtctggttcaccaa |
216 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26127196 |
gattggcaaatttattagagaaaattgcagtaaaccgagagatcatagttgcccttgcaaactccaatgttaaggaaaccctcgaggtctggttcaccaa |
26127097 |
T |
|
| Q |
217 |
tatcaagagagtcggtatacctaattatctagttgttgccttagacgatgaaatttcaaagttttgcgaatcgaataaagtcccattttacaaaagagac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| |
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|
| T |
26127096 |
tatcaagagagtcggtatacctaattatttagttgttgccttagacgatgaaatttcaaagttttgtgaatcaaataaagtcccgttttacaaaagagac |
26126997 |
T |
|
| Q |
317 |
ccggatgatggtattgatactgttggaaaaacaggagggagcgcggctgtctctgggcttaaatttcgtattctaagagaatttttgcagttgggatata |
416 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26126996 |
ccggatgatgctattgatactgttggaaaaataggagggagagcggctgtctctgggcttaaatttcgtattttaagagaatttttgcagttgggatata |
26126897 |
T |
|
| Q |
417 |
gcgttc |
422 |
Q |
| |
|
|||||| |
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|
| T |
26126896 |
gcgttc |
26126891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 21 - 422
Target Start/End: Complemental strand, 26065348 - 26064947
Alignment:
| Q |
21 |
ttgcatcagttaaagaggaaagagctggaccttttggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaatccgtgaacccgagatt |
120 |
Q |
| |
|
|||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
26065348 |
ttgcattaggtaaacaggaaaaagctggaccttttggtactgtcaaggcattaagaaccaatcctaatgttgctcctgatgaatccgtgaacccgagatt |
26065249 |
T |
|
| Q |
121 |
ggcaaatttattagagaaaatagcagttaaccgagagatcatagttgcccttgcaaactccaatgttaaggaaaccctcgaggtctggttcaccaatatc |
220 |
Q |
| |
|
||||||| ||||||| ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||| |||||| |
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|
| T |
26065248 |
ggcaaatatattagataaaatcgcagttaaacaagagatcatagttgcccttgcaaactccaatgttaaggagatcctggaagtctggttcactaatatc |
26065149 |
T |
|
| Q |
221 |
aagagagtcggtatacctaattatctagttgttgccttagacgatgaaatttcaaagttttgcgaatcgaataaagtcccattttacaaaagagacccgg |
320 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||||| |||| |||| ||||||||||||||||||||||||||| |
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|
| T |
26065148 |
aagagagttggtatatctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaattgaatcaagtcccattttacaaaagagacccgg |
26065049 |
T |
|
| Q |
321 |
atgatggtattgatactgttggaaaaacaggagggagcgcggctgtctctgggcttaaatttcgtattctaagagaatttttgcagttgggatatagcgt |
420 |
Q |
| |
|
|| ||||||||||| |||||||||||| |||| ||| |||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
26065048 |
ataatggtattgatgctgttggaaaaagaggaaagagaacggctgtctccgggcttaaatttcgtattctaagggaatttttgcagctgggatatagcgt |
26064949 |
T |
|
| Q |
421 |
tc |
422 |
Q |
| |
|
|| |
|
|
| T |
26064948 |
tc |
26064947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 21 - 414
Target Start/End: Complemental strand, 26120635 - 26120242
Alignment:
| Q |
21 |
ttgcatcagttaaagaggaaagagctggaccttttggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaatccgtgaacccgagatt |
120 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
26120635 |
ttgcattagttaaacaggaaaaagctggaccttttggtactgtcaaggcattaagaaccaatcctattgttgctcctgatgaatccgtgaacccgagatt |
26120536 |
T |
|
| Q |
121 |
ggcaaatttattagagaaaatagcagttaaccgagagatcatagttgcccttgcaaactccaatgttaaggaaaccctcgaggtctggttcaccaatatc |
220 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||||| || || | ||||||| ||||||||||||||||| |
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|
| T |
26120535 |
ggcaaatttattagagaaaatcgcagttaaacgagagatcatagttacccttgcaaactcaaatgtgaaagagatcctcgagatctggttcaccaatatc |
26120436 |
T |
|
| Q |
221 |
aagagagtcggtatacctaattatctagttgttgccttagacgatgaaatttcaaagttttgcgaatcgaataaagtcccattttacaaaagagacccgg |
320 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |
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|
| T |
26120435 |
aagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaatcgaatcaagtcccattttacaaaagagacccgg |
26120336 |
T |
|
| Q |
321 |
atgatggtattgatactgttggaaaaacaggagggagcgcggctgtctctgggcttaaatttcgtattctaagagaatttttgcagttgggata |
414 |
Q |
| |
|
|| |||||||||||||||||||||||| | ||| ||||||||| | || ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26120335 |
ataatggtattgatactgttggaaaaattccaaacggcgaggctgtctccagtctcaaattccgtattctaagagaatttttgcagttgggata |
26120242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 31 - 422
Target Start/End: Complemental strand, 26085063 - 26084672
Alignment:
| Q |
31 |
taaagaggaaagagctggaccttttggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaatccgtgaacccgagattggcaaattta |
130 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
26085063 |
taaacaggaaaaagctggaccttttggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaattcttgaacccgagattggcaaattta |
26084964 |
T |
|
| Q |
131 |
ttagagaaaatagcagttaaccgagagatcatagttgcccttgcaaactccaatgttaaggaaaccctcgaggtctggttcaccaatatcaagagagtcg |
230 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||||| | |
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|
| T |
26084963 |
ttagagaaaatcgcagttaaacgagagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttg |
26084864 |
T |
|
| Q |
231 |
gtatacctaattatctagttgttgccttagacgatgaaatttcaaagttttgcgaatcgaataaagtcccattttacaaaagagacccggatgatggtat |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||||| |||||||||||||||||| |||||||||||||| ||| ||| |
|
|
| T |
26084863 |
gtatacctaattatctagttgttgccttagacgatgagattgcaaaattttgtgaatctaataaagtcccattttaccaaagagacccggataatgatat |
26084764 |
T |
|
| Q |
331 |
tgatactgttggaaaaacaggagggagcgcggctgtctctgggcttaaatttcgtattctaagagaatttttgcagttgggatatagcgttc |
422 |
Q |
| |
|
||||||||||||||||| | | | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26084763 |
tgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttc |
26084672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 26097352 - 26096947
Alignment:
| Q |
17 |
catattgcatcagttaaagaggaaagagctggaccttttggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaatccgtgaacccga |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| | |
|
|
| T |
26097352 |
catattgcatcagttaaagaggaaaaagctggaccttttggtactgtcaaggcaataagaaccagtcctaatgttgctcctgatgaatccgtgaacccaa |
26097253 |
T |
|
| Q |
117 |
gattggcaaatttattagagaaaatagcagttaaccgagagatcatagttgcccttgcaaactccaatgttaaggaaaccctcgaggtctggttcaccaa |
216 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| |||||||| |||||| ||||||||||||| ||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
26097252 |
gattggcaaagatattagagaaaatcgcagttaaacgagagattatagttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaa |
26097153 |
T |
|
| Q |
217 |
tatcaagagagtcggtatacctaattatctagttgttgccttagacgatgaaatttcaaagttttgcgaatcgaataaagtcccattttacaaaagagac |
316 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
26097152 |
tatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaatcgaataaagtcccattttaccaaagagac |
26097053 |
T |
|
| Q |
317 |
ccggatgatggtattgatactgttggaaaaacaggagggagcgcggctgtctctgggcttaaatttcgtattctaagagaatttttgcagttgggatata |
416 |
Q |
| |
|
||||| ||||| |||||||||||||||||| | ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26097052 |
ccggacaatggttttgatactgttggaaaaatggtcaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggatata |
26096953 |
T |
|
| Q |
417 |
gcgttc |
422 |
Q |
| |
|
| |||| |
|
|
| T |
26096952 |
gtgttc |
26096947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 415
Target Start/End: Complemental strand, 26036700 - 26036306
Alignment:
| Q |
21 |
ttgcatcagttaaagaggaaagagctggaccttttggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaatccgtgaacccgagatt |
120 |
Q |
| |
|
|||||| || |||| | |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
26036700 |
ttgcattaggtaaacaagaaaaagctggaccttttggtactgtcaagggattaagaaccaatcctactgttgttcctgatgaatccgtgaatccaagatt |
26036601 |
T |
|
| Q |
121 |
ggcaaatttattagagaaaatagcagttaaccgagagatcatagttgcccttgcaaactccaatgttaaggaaaccctcgaggtctggttcaccaatatc |
220 |
Q |
| |
|
|||||| |||| |||||||| ||||||| |||||||||||||| || |||||||| |||||||| ||||| | | |||||||||||| | |||||| |
|
|
| T |
26036600 |
ggcaaagatattggagaaaatctcagttaaacgagagatcatagtagcacttgcaaattccaatgtgaaggagatgttagaggtctggttctcaaatatc |
26036501 |
T |
|
| Q |
221 |
aagagagtcggtatacctaattatctagttgttgccttagacgatgaaatttcaaagttttgcgaatcgaataaagtcccattttacaaaagagacccgg |
320 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||| ||||| ||| | ||| ||||||||||||||||||||||||| | |
|
|
| T |
26036500 |
aagagagttggtatatctaattatctagttgttgctttagacgatgagatttcaaaattttgtgaaacaaatcaagtcccattttacaaaagagacccag |
26036401 |
T |
|
| Q |
321 |
atgatggtattgatactgttggaaaaacaggagggagcgcggctgtctctgggcttaaatttcgtattctaagagaatttttgcagttgggatat |
415 |
Q |
| |
|
||||||||||||| || |||||||| |||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26036400 |
atgatggtattgacaccattggaaaacaaggagggaaccatgctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatat |
26036306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 6773998 - 6773916
Alignment:
| Q |
44 |
gctggaccttttggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaatccgtgaacccgagattggcaaa |
126 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||| |||||| ||||| ||| ||||| || |||||||| ||||||||||| |
|
|
| T |
6773998 |
gctggtccttttggtactgtcaaggctctcagaacaaatccttctgttattcccgatgagtcagtgaaccctagattggcaaa |
6773916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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