View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15585_low_5 (Length: 283)

Name: NF15585_low_5
Description: NF15585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15585_low_5
NF15585_low_5
[»] chr7 (6 HSPs)
chr7 (19-188)||(10029207-10029376)
chr7 (242-277)||(16537539-16537574)
chr7 (242-277)||(16628088-16628123)
chr7 (246-283)||(2962733-2962770)
chr7 (242-274)||(25251536-25251568)
chr7 (239-283)||(35396650-35396694)
[»] chr5 (8 HSPs)
chr5 (239-283)||(27679515-27679559)
chr5 (242-283)||(14681257-14681298)
chr5 (239-283)||(3052198-3052242)
chr5 (242-274)||(30488951-30488983)
chr5 (239-276)||(38756754-38756791)
chr5 (239-283)||(11647214-11647258)
chr5 (239-283)||(19248496-19248540)
chr5 (241-277)||(34987153-34987189)
[»] chr6 (2 HSPs)
chr6 (236-277)||(8211595-8211636)
chr6 (242-274)||(14918303-14918335)
[»] chr8 (4 HSPs)
chr8 (239-283)||(27571849-27571893)
chr8 (242-283)||(5179810-5179851)
chr8 (240-277)||(15021624-15021661)
chr8 (242-274)||(16392597-16392629)
[»] chr3 (7 HSPs)
chr3 (239-283)||(48376852-48376896)
chr3 (242-283)||(2078257-2078298)
chr3 (239-276)||(47099035-47099072)
chr3 (242-274)||(20612280-20612312)
chr3 (242-274)||(38221754-38221786)
chr3 (239-283)||(48315024-48315068)
chr3 (242-274)||(52454980-52455012)
[»] chr2 (9 HSPs)
chr2 (239-274)||(25603911-25603946)
chr2 (239-274)||(31476997-31477032)
chr2 (246-276)||(34364502-34364532)
chr2 (246-276)||(42372158-42372188)
chr2 (242-283)||(30243267-30243308)
chr2 (242-274)||(9547412-9547444)
chr2 (242-274)||(18611966-18611998)
chr2 (239-283)||(20120721-20120765)
chr2 (242-274)||(29896297-29896329)
[»] chr1 (6 HSPs)
chr1 (239-277)||(34599919-34599957)
chr1 (242-274)||(3157720-3157752)
chr1 (239-283)||(24978261-24978305)
chr1 (242-282)||(27127242-27127282)
chr1 (245-281)||(35527937-35527973)
chr1 (245-277)||(42416826-42416858)
[»] scaffold0608 (1 HSPs)
scaffold0608 (240-281)||(7377-7418)
[»] chr4 (4 HSPs)
chr4 (242-283)||(6087764-6087805)
chr4 (237-278)||(8974976-8975017)
chr4 (240-277)||(38939535-38939572)
chr4 (242-274)||(47015571-47015603)
[»] scaffold1149 (1 HSPs)
scaffold1149 (242-274)||(2358-2390)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 10029207 - 10029376
Alignment:
Q  19 ggttaacttgtgtaaatgtgaatatttgtagatatgacgtggtgaatgtatacacacacgaatacatgtttaatgaaaataagtaaagcaaatttaacgt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  10029207 ggttaacttgtgtaaatgtgaatatttgtagatatgacgtggtgaatgtatacacacatgaatacatgtttaatgaaaataagtaaagcaaatgtaacgt 10029306  T
Q  119 tgctacactttacacacttcaattagccaccactttgnnnnnnngtgtgtgcacatttacaaggcactta 188  Q
    |||||||||||||||| ||||||||| ||||||||||       ||||||||||||||||||||||||||    
T  10029307 tgctacactttacacagttcaattagtcaccactttgtttttttgtgtgtgcacatttacaaggcactta 10029376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 16537539 - 16537574
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcattatc 277  Q
    ||||||||||| ||||||||||||||||||||||||    
T  16537539 tttgaaccccagaccttgtatatattatgcattatc 16537574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 16628123 - 16628088
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcattatc 277  Q
    ||||||||||| ||||||||||||||||||||||||    
T  16628123 tttgaaccccagaccttgtatatattatgcattatc 16628088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 2962733 - 2962770
Alignment:
Q  246 aaccccaaaccttgtatatattatgcattatctttacc 283  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  2962733 aaccccgaaccttgcatatattatgcattatctttacc 2962770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 25251568 - 25251536
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcatt 274  Q
    ||||||||||||||||| |||||||||||||||    
T  25251568 tttgaaccccaaaccttatatatattatgcatt 25251536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 35396694 - 35396650
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    ||||||||||||||||| || ||||| |||||||||||| |||||    
T  35396694 ggatttgaaccccaaacgttatatattttatgcattatccttacc 35396650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 27679559 - 27679515
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||    
T  27679559 ggatttgaaccccgaaccttgcatatattatgcattatctttacc 27679515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 14681257 - 14681298
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  14681257 tttgaaccccgaaccttctatatattatgcattatctttacc 14681298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 3052242 - 3052198
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    ||||||||||||||||||||  ||||||||||||||||| |||||    
T  3052242 ggatttgaaccccaaaccttacatatattatgcattatccttacc 3052198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 30488983 - 30488951
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcatt 274  Q
    |||||||||||||||||||||||||||||||||    
T  30488983 tttgaaccccaaaccttgtatatattatgcatt 30488951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 38756791 - 38756754
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcattat 276  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  38756791 ggatttgaaccccgaaccttgtatatattatacattat 38756754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 11647258 - 11647214
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    ||||| ||||||||||||||| |||||||||||||| || |||||    
T  11647258 ggattcgaaccccaaaccttgcatatattatgcattgtccttacc 11647214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 19248540 - 19248496
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    ||||||||||||||||| ||| |||||||||||||| ||| ||||    
T  19248540 ggatttgaaccccaaacattgcatatattatgcattgtctatacc 19248496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 34987153 - 34987189
Alignment:
Q  241 atttgaaccccaaaccttgtatatattatgcattatc 277  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  34987153 atttgaaccccgaaccttggatatattatgcattatc 34987189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 8211595 - 8211636
Alignment:
Q  236 cctggatttgaaccccaaaccttgtatatattatgcattatc 277  Q
    |||||||||||||||| ||| |||||||||||||||||||||    
T  8211595 cctggatttgaaccccgaactttgtatatattatgcattatc 8211636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 14918303 - 14918335
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcatt 274  Q
    ||||||||||| |||||||||||||||||||||    
T  14918303 tttgaaccccagaccttgtatatattatgcatt 14918335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 27571849 - 27571893
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||||    
T  27571849 ggatttgaaccccaaaccttgcatatattatgcattgtctgtacc 27571893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 5179851 - 5179810
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    |||||||||| |||||||||||||||||||||| || |||||    
T  5179851 tttgaaccccgaaccttgtatatattatgcattgtccttacc 5179810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 15021624 - 15021661
Alignment:
Q  240 gatttgaaccccaaaccttgtatatattatgcattatc 277  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  15021624 gatttgaacctcaaaccttgtatattttatgcattatc 15021661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 16392629 - 16392597
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcatt 274  Q
    ||||||||||||||||||||||| |||||||||    
T  16392629 tttgaaccccaaaccttgtatattttatgcatt 16392597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 48376896 - 48376852
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    ||||| ||||||||||||||  |||||||||||||||||||||||    
T  48376896 ggattcgaaccccaaaccttacatatattatgcattatctttacc 48376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 2078298 - 2078257
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    |||||||||||||||||| |||||||||||||| ||| ||||    
T  2078298 tttgaaccccaaaccttgcatatattatgcattgtctctacc 2078257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 47099035 - 47099072
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcattat 276  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  47099035 ggatttgaaccccgaaccttgcatatattatgcattat 47099072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 20612280 - 20612312
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcatt 274  Q
    |||||||||||||||||| ||||||||||||||    
T  20612280 tttgaaccccaaaccttgcatatattatgcatt 20612312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 38221786 - 38221754
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcatt 274  Q
    |||||||||||||| ||||||||||||||||||    
T  38221786 tttgaaccccaaactttgtatatattatgcatt 38221754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 48315024 - 48315068
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    |||||||||||||  |||||| ||||||||||||||||| |||||    
T  48315024 ggatttgaaccccggaccttgcatatattatgcattatccttacc 48315068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 52454980 - 52455012
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcatt 274  Q
    |||||||||| ||||||||||||||||||||||    
T  52454980 tttgaaccccgaaccttgtatatattatgcatt 52455012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 274
Target Start/End: Original strand, 25603911 - 25603946
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcatt 274  Q
    |||||||||||||||||||| |||||||||||||||    
T  25603911 ggatttgaaccccaaaccttatatatattatgcatt 25603946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 274
Target Start/End: Complemental strand, 31477032 - 31476997
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcatt 274  Q
    ||||||||||||| ||||||||||||||||||||||    
T  31477032 ggatttgaaccccgaaccttgtatatattatgcatt 31476997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 276
Target Start/End: Original strand, 34364502 - 34364532
Alignment:
Q  246 aaccccaaaccttgtatatattatgcattat 276  Q
    |||||||||||||||||||||||||||||||    
T  34364502 aaccccaaaccttgtatatattatgcattat 34364532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 276
Target Start/End: Original strand, 42372158 - 42372188
Alignment:
Q  246 aaccccaaaccttgtatatattatgcattat 276  Q
    |||||||||||||||||||||||||||||||    
T  42372158 aaccccaaaccttgtatatattatgcattat 42372188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 30243308 - 30243267
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    |||||||||| |||||||||||||||||||||| ||| ||||    
T  30243308 tttgaaccccgaaccttgtatatattatgcattgtctctacc 30243267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 9547412 - 9547444
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcatt 274  Q
    |||||||||||||||||| ||||||||||||||    
T  9547412 tttgaaccccaaaccttgcatatattatgcatt 9547444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 18611966 - 18611998
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcatt 274  Q
    |||||||||||||||||| ||||||||||||||    
T  18611966 tttgaaccccaaaccttgcatatattatgcatt 18611998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 20120721 - 20120765
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    ||||||||||||| ||||||| |||||||||||||| || |||||    
T  20120721 ggatttgaaccccgaaccttgcatatattatgcattgtccttacc 20120765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 29896297 - 29896329
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcatt 274  Q
    |||||||||||||||||| ||||||||||||||    
T  29896297 tttgaaccccaaaccttgcatatattatgcatt 29896329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 34599919 - 34599957
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcattatc 277  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  34599919 ggattcgaaccccaaaccttatatatattatgcattatc 34599957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 3157720 - 3157752
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcatt 274  Q
    |||||||| ||||||||||||||||||||||||    
T  3157720 tttgaacctcaaaccttgtatatattatgcatt 3157752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 24978305 - 24978261
Alignment:
Q  239 ggatttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    |||||||||||| |||||||| |||||||||| ||||||| ||||    
T  24978305 ggatttgaaccctaaaccttgcatatattatgtattatctatacc 24978261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 27127282 - 27127242
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcattatctttac 282  Q
    ||||||| ||| |||||||||||||||||||||||| ||||    
T  27127282 tttgaacgccagaccttgtatatattatgcattatccttac 27127242  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 35527973 - 35527937
Alignment:
Q  245 gaaccccaaaccttgtatatattatgcattatcttta 281  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  35527973 gaaccccaaaccttatatatattatgcattattttta 35527937  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 42416858 - 42416826
Alignment:
Q  245 gaaccccaaaccttgtatatattatgcattatc 277  Q
    ||||||||||||||| |||||||||||||||||    
T  42416858 gaaccccaaaccttgcatatattatgcattatc 42416826  T

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Target: scaffold0608 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 7377 - 7418
Alignment:
Q  240 gatttgaaccccaaaccttgtatatattatgcattatcttta 281  Q
    |||||||||||| ||||||| |||| ||||||||||||||||    
T  7377 gatttgaacccccaaccttgcatatcttatgcattatcttta 7418  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 6087805 - 6087764
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcattatctttacc 283  Q
    ||||||||||| |||||| |||||||||||||||||| ||||    
T  6087805 tttgaaccccagaccttgcatatattatgcattatctatacc 6087764  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 8974976 - 8975017
Alignment:
Q  237 ctggatttgaaccccaaaccttgtatatattatgcattatct 278  Q
    |||| ||||||||| ||||||| |||||||||||||||||||    
T  8974976 ctgggtttgaaccctaaaccttatatatattatgcattatct 8975017  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 38939535 - 38939572
Alignment:
Q  240 gatttgaaccccaaaccttgtatatattatgcattatc 277  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  38939535 gatttgaaccccagaccttatatatattatgcattatc 38939572  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 47015571 - 47015603
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcatt 274  Q
    ||||||||||| |||||||||||||||||||||    
T  47015571 tttgaaccccagaccttgtatatattatgcatt 47015603  T

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Target: scaffold1149 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 2390 - 2358
Alignment:
Q  242 tttgaaccccaaaccttgtatatattatgcatt 274  Q
    |||||||||||||||||| ||||||||||||||    
T  2390 tttgaaccccaaaccttgcatatattatgcatt 2358  T

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