View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15585_low_8 (Length: 235)
Name: NF15585_low_8
Description: NF15585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15585_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 47582253 - 47582468
Alignment:
| Q |
1 |
atcatttaagggtaccatgcagggtagggatatccaaaattcaaaaataggtttgtcatgtaaaccattataaggttgttttataaagtgaattggtttt |
100 |
Q |
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| T |
47582253 |
atcatttaagggtaccatgcagggtagggatatccaaaattcaaaaataggtttgtcatgtaaaccattataaggttgttttttaaagtgaattggtttt |
47582352 |
T |
|
| Q |
101 |
aactccttttccttttctannnnnnnnaatcatatataaacaagagacttctatttaaataaaagtgtaaaaccttgtctttcgtaccctgttaattttt |
200 |
Q |
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|||||||||||||| | | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47582353 |
aactccttttccttctat-ttttttttaatcatatataaagaagagacttctatttaaataaaagtgtaaaaccttgtctttcgtaccctaataattttt |
47582451 |
T |
|
| Q |
201 |
cttactatttttaaggt |
217 |
Q |
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||||||||||||||||| |
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| T |
47582452 |
cttactatttttaaggt |
47582468 |
T |
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