View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15586_high_1 (Length: 430)
Name: NF15586_high_1
Description: NF15586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15586_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 27777892 - 27777604
Alignment:
| Q |
13 |
cttttaaacaaggaatgtcttgcacattggtaaatagagatatagtagagactagagaataaaggaaaaatgctagacagcgatgataatgaacaatgta |
112 |
Q |
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| T |
27777892 |
cttttaaacaaggaatgtcttgcacattggtaaatagagatatagtagagactagagaataaaggaaaaatgctagacagcgatgataatgaacaatgta |
27777793 |
T |
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| Q |
113 |
gtttttgtgttggactaaattggaagaaagaatccacgtgtgtcttgatgcttttgtagcatcttagttaatttcttcacttgtcttccaaagaaccttg |
212 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27777792 |
gtttttgtgttggactaattttgaagaaagaatccacgtgtgtcttgatgcttttgtagcatcttagttaatttcttcacatgtcttccaaagaaccttg |
27777693 |
T |
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| Q |
213 |
agcagctgtgtggatagatattacatcaatgttgatatacattaaggtaagcgtaattactaccctataagttaatttcttagttacccataattgat |
310 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
27777692 |
agcagttgtgtggatagatattacatcaatgttgatata---------aagcgtaattactaccctataaattaattgggctgttacccataattgat |
27777604 |
T |
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