View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15586_low_1 (Length: 430)

Name: NF15586_low_1
Description: NF15586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15586_low_1
NF15586_low_1
[»] chr8 (1 HSPs)
chr8 (13-310)||(27777604-27777892)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 27777892 - 27777604
Alignment:
Q  13 cttttaaacaaggaatgtcttgcacattggtaaatagagatatagtagagactagagaataaaggaaaaatgctagacagcgatgataatgaacaatgta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27777892 cttttaaacaaggaatgtcttgcacattggtaaatagagatatagtagagactagagaataaaggaaaaatgctagacagcgatgataatgaacaatgta 27777793  T
Q  113 gtttttgtgttggactaaattggaagaaagaatccacgtgtgtcttgatgcttttgtagcatcttagttaatttcttcacttgtcttccaaagaaccttg 212  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27777792 gtttttgtgttggactaattttgaagaaagaatccacgtgtgtcttgatgcttttgtagcatcttagttaatttcttcacatgtcttccaaagaaccttg 27777693  T
Q  213 agcagctgtgtggatagatattacatcaatgttgatatacattaaggtaagcgtaattactaccctataagttaatttcttagttacccataattgat 310  Q
    ||||| |||||||||||||||||||||||||||||||||         |||||||||||||||||||||| ||||||     ||||||||||||||||    
T  27777692 agcagttgtgtggatagatattacatcaatgttgatata---------aagcgtaattactaccctataaattaattgggctgttacccataattgat 27777604  T

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