View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15587_high_10 (Length: 369)
Name: NF15587_high_10
Description: NF15587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15587_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 12315139 - 12314813
Alignment:
| Q |
18 |
gtattgttgttttgttattagttattaatatattgtgcttgaagatatgatagaaaaataataggattagcattatggagtaagtaacaacattatgaaa |
117 |
Q |
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| T |
12315139 |
gtattgttgttttgttattagttattaatatattgtgcttgaagatatgatagaaaaataataggattagcattatggagtaagtaacaacgttatgaaa |
12315040 |
T |
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| Q |
118 |
tagttaagtgttgataagtaaaaatgcatacctttctcgtcatttttaaatttgtttttgtgctcctaagcatgttgatgatagttaatatctttttcaa |
217 |
Q |
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| T |
12315039 |
tagttaagtgttgataagtaaaaatgcatacctttctcgtcattttcaaatttgttgttgtgctcctaagcatgttgatgatagttaatatctttttcaa |
12314940 |
T |
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| Q |
218 |
cattataattttgatgcatcacaatagaaaattatatagtttgtgacggttgaacataacccaatgcttatttgggtgaataatgataagcatgtgatgt |
317 |
Q |
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| T |
12314939 |
cattataaatttgatgcatcacaatagaaaattatatagtttgtgacggttgaacataacccaatgcttgtttgggtgaataatgataagcatgtgatgt |
12314840 |
T |
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| Q |
318 |
gctatctctatcttttgacttatcaaa |
344 |
Q |
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| T |
12314839 |
gctatctctatcttttgactcatcaaa |
12314813 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 21279508 - 21279415
Alignment:
| Q |
20 |
attgttgttttgttattagttattaatatattgtgcttgaagatatgatagaaaaataataggattagcattatggagtaagtaacaacattat |
113 |
Q |
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| T |
21279508 |
attgttgttgtgttattaacaattaatatactgtttttgaacatgtgatagaaaaacaataggattagccttatcaagtaagtaacaacattat |
21279415 |
T |
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