View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15587_high_20 (Length: 221)
Name: NF15587_high_20
Description: NF15587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15587_high_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 30661259 - 30661448
Alignment:
| Q |
1 |
aggctttctacataccatatttaagacaaatatggacatggttaggtttttcatctgtgacaaagaaaaatttaatttctttgttggtagctggtgatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| || ||||||||||||||||| || |
|
|
| T |
30661259 |
aggctttctacataccatatttaagacaaatatggacatggttaggtttttcatatgtaacgaagaaaaatttaatatccttgttggtagctggtgaaag |
30661358 |
T |
|
| Q |
101 |
ttgcattatagtacctggtggaatgagagaaacactttttatggaacatggttgtgaggtacattacttatcaaatgcaaaagtaataat |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30661359 |
ttgcattatagtacctggtggaatgagagaaacactttttatggaacatggttgtgaggtacattacttatcaaatgcaaaagtaataat |
30661448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 164
Target Start/End: Complemental strand, 13199404 - 13199245
Alignment:
| Q |
5 |
tttctacataccatatttaagacaaatatggacatggttaggtttttcatctgtgacaaagaaaaatttaatttctttgttggtagctggtgatagttgc |
104 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||| |||||| |||||| |||| ||| ||||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
13199404 |
tttctacataccatttttgagacaagtatggatatggttgggttttacatcagtggataagaagaatttaatttccttgttggaagctggcaatagttgc |
13199305 |
T |
|
| Q |
105 |
attatagtacctggtggaatgagagaaacactttttatggaacatggttgtgaggtacat |
164 |
Q |
| |
|
|| ||||||||||||||| | ||||| ||||||||||| ||||| | ||||||||| |
|
|
| T |
13199304 |
atgttagtacctggtggaaaccgtgaaaccctttttatggagcatgggttcgaggtacat |
13199245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 10112763 - 10112647
Alignment:
| Q |
6 |
ttctacataccatatttaagacaaatatggacatggttaggtttttcatctgtgacaaagaaaaatttaatttctttgttggtagctggtgatagttgca |
105 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||| ||| || || | | |||| ||||||||| || || |||| | |||||| ||||||||| |
|
|
| T |
10112763 |
ttctacacaccatttttaagacacatatggacatggttgggtcttacaccagcaacaaggaaaaattttatctccctgttagctgctggttatagttgca |
10112664 |
T |
|
| Q |
106 |
ttatagtacctggtgga |
122 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
10112663 |
ttttaatacctggtgga |
10112647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University