View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15587_high_6 (Length: 419)
Name: NF15587_high_6
Description: NF15587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15587_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 41744126 - 41744501
Alignment:
| Q |
1 |
taaaaggacaaccaaaattctaaccttgcatccaatagcctagccttaacatcaataggtttaatactttataatataatcnnnnnnnnnactattctta |
100 |
Q |
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| T |
41744126 |
taaaaggacaaccaaaattctaaccttgcatccaatagcctagccttaacatcaataggtttaatactttataatataatctttttttt-actattctta |
41744224 |
T |
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| Q |
101 |
tggcttatcaattcatgtttacttcttgtgcatagtcacataatatggatttaaatgagatagtaatgttattaaatatgaatcaaaatgatgtagtcat |
200 |
Q |
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| T |
41744225 |
tggcttatcaattcatgtttacttcttgtgcatagtcacataatatggatttaaatgagatagtcatgttattaaatatggatcaaaatgatgtagtcat |
41744324 |
T |
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| Q |
201 |
atcgattttagttatcatatgactttgtttttcttttgaaaatcgatctaaactgcaccggaaacatcttgatagtttaatcatttaacacactacaaac |
300 |
Q |
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| T |
41744325 |
atcgattttagttatcatatgactttgtttttcttctgaaaatcgatctaaactgcaccggaaacatcttgatagtttaatcatttgacacactacaaac |
41744424 |
T |
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| Q |
301 |
aaaaagaatatgcccaagattgataagtaatatcttaccttgttagctaatataatgtgattgaattagaagctaat |
377 |
Q |
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| T |
41744425 |
aaaaagaatatgcccaagattgataagtaatatcttaccttgttagctaatataatgtgattgaattagaagctaat |
41744501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 41746759 - 41746805
Alignment:
| Q |
373 |
ctaatcaagacgaaggatgtcaaaatatcaaatcaactgattaattt |
419 |
Q |
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| T |
41746759 |
ctaatcaagacgaaggatgtcaaaatatcaaatcaactgattaattt |
41746805 |
T |
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