View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15587_high_8 (Length: 393)
Name: NF15587_high_8
Description: NF15587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15587_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 3 - 377
Target Start/End: Original strand, 14496358 - 14496732
Alignment:
| Q |
3 |
aataatttaaattagttaatttggctaagatacaaatattaaaaacatggagaaactattatggtaggaagttgagcaatggttactgtttttgaatgct |
102 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
14496358 |
aataatttaaattagttaatttggctaagatacaaaaatttaaaacatggagaaaatattatggtaggtagttgagcaatggtaactgtttttgaatgct |
14496457 |
T |
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| Q |
103 |
aaccaaatatagtgcatttaagagtaagacagaatcattgaaatatcaaaataaagaaaaagtgtgtttcaacaaatgaagaatcaattaagttgaagta |
202 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14496458 |
aaccaaatatagtgcatttaagagtaagacaaaatcattgaaatatcaaaataaagaaaaagtgtgtttcaacaaatgaagaatcagttaagttgaagta |
14496557 |
T |
|
| Q |
203 |
atggatgaattaaaacttgcctgccaaccagcttcaatggtgttgagatcatctccaaatgaaccagaaatgacccacatttgggacaagctgaattcat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14496558 |
atggatgaattaaaacttgcctgccaaccagcttcaatggtgttaagatcatctccaaatgaaccagaaatgacccacatttgggacaagctgaattcat |
14496657 |
T |
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| Q |
303 |
attgatttgctacacgtggggcccacacgtttatgctagcctttgctccatagtattgatttccagtcacatatc |
377 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14496658 |
attggtttgctacacgtggggcccacacgtttatgctagcctttgctccatagtattgatttccagtcacatatc |
14496732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 354
Target Start/End: Original strand, 29213738 - 29213870
Alignment:
| Q |
222 |
cctgccaaccagcttcaatggtgttgagatcatctccaaatgaaccagaaatgacccacatttgggacaagctgaattcatattgatttgctacacgtgg |
321 |
Q |
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||||||||||||||||||| || |||||||| ||||||||||||||||| |||| ||| ||||| || ||||||||||||||| || || | || |||| |
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| T |
29213738 |
cctgccaaccagcttcaatagtattgagatcttctccaaatgaaccagagatgatccatatttgagataagctgaattcatatggactttccacttgtgg |
29213837 |
T |
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| Q |
322 |
ggcccacacgtttatgctagcctttgctccata |
354 |
Q |
| |
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| T |
29213838 |
gacccacacatttatgctagcttttgctccata |
29213870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 373
Target Start/End: Complemental strand, 29254488 - 29254335
Alignment:
| Q |
220 |
tgcctgccaaccagcttcaatggtgttgagatcatctccaaatgaaccagaaatgacccacatttgggacaagctgaattcatattgatttgctacacgt |
319 |
Q |
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||||||||||||||||||||||||||| | || | |||||||| |||||| | || ||||||||| | |||||| ||||||| | | ||| | ||| | |
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| T |
29254488 |
tgcctgccaaccagcttcaatggtgttcatgtcttttccaaatgtaccagagacgatccacatttgtgccaagcttaattcatctaggttttcaacatgg |
29254389 |
T |
|
| Q |
320 |
ggggcccacacgtttatgctagcctttgctccatagtattgatttccagtcaca |
373 |
Q |
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||||||||||| |||||| |||||| |||||||| |||| || |||||||||| |
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|
| T |
29254388 |
ggggcccacacatttatggtagcctgtgctccatggtatctatctccagtcaca |
29254335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 29234710 - 29234630
Alignment:
| Q |
220 |
tgcctgccaaccagcttcaatggtgttgagatcatctccaaatgaaccagaaatgacccacatttgggacaagctgaattc |
300 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||| | |||| | | ||| ||||| | |||||||||||| |
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| T |
29234710 |
tgcctgccaaccagcttcaatggtgttacggtcatctccaaatggatcagataaaatccatatttgagccaagctgaattc |
29234630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 29364780 - 29364704
Alignment:
| Q |
277 |
ccacatttgggacaagctgaattcatattgatttgctacacgtggggcccacacgtttatgctagcctttgctccat |
353 |
Q |
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||||||||| | |||||||||||||| | || || | || | ||||||||||||||||| ||||||||||||||| |
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| T |
29364780 |
ccacatttgagccaagctgaattcatttggactttccacttggggggcccacacgtttattgtagcctttgctccat |
29364704 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 367
Target Start/End: Original strand, 34759787 - 34759934
Alignment:
| Q |
220 |
tgcctgccaaccagcttcaatggtgttgagatcatctccaaatgaaccagaaatgacccacatttgggacaagctgaattcatattgatttgctacacgt |
319 |
Q |
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|||||||||||||||||| | ||| |||||||||| ||||| || |||| ||| ||||| || || |||||||| ||||||||| || || |||| | |
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| T |
34759787 |
tgcctgccaaccagcttctagggtattgagatcattaccaaaggagccagcaataacccatatctgtgacaagctaaattcatatccatctgttacatga |
34759886 |
T |
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| Q |
320 |
ggggcccacacgtttatgctagcctttgctccatagtattgatttcca |
367 |
Q |
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| T |
34759887 |
ggtgcccacacatttatgtttgcctttgctccaaagtattgatttcca |
34759934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 351
Target Start/End: Original strand, 43814502 - 43814635
Alignment:
| Q |
215 |
aaacttgcctgccaaccagcttcaatggtgttgagatcatctccaaatgaaccagaaatgacccacatttgggacaagctgaattcatattgatttgcta |
314 |
Q |
| |
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|||| ||||||||| ||||||||||||| |||||||| | | |||||| ||||| | |||||| ||||| | ||| |||||||| |||| || | | |
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| T |
43814502 |
aaacatgcctgccatccagcttcaatggaattgagatccttttcaaatgtgccagagaggacccatatttgagccaaactgaattc---ttgactttcca |
43814598 |
T |
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| Q |
315 |
cacgtggggcccacacgtttatgctagcctttgctcc |
351 |
Q |
| |
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| T |
43814599 |
catgtggggcccacacgtttaagtttgcctttgctcc |
43814635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 360
Target Start/End: Original strand, 43729008 - 43729148
Alignment:
| Q |
220 |
tgcctgccaaccagcttcaatggtgttgagatcatctccaaatgaaccagaaatgacccacatttgggacaagctgaattcatattgatttgctacacgt |
319 |
Q |
| |
|
||||||||| |||||||| | || || ||||||| |||||||| |||| ||| ||||| ||||| || ||||||||||||||||||| | ||| | | |
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| T |
43729008 |
tgcctgccatccagcttctaatgtattaagatcattaccaaatgatccagcaataacccatatttgtgataagctgaattcatattgatcagttaccctt |
43729107 |
T |
|
| Q |
320 |
ggggcccacacgtttatgctagcctttgctccatagtattg |
360 |
Q |
| |
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|| | |||||| |||||||| || ||||||||||||||||| |
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| T |
43729108 |
ggtgtccacacatttatgcttgcttttgctccatagtattg |
43729148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 373
Target Start/End: Original strand, 30928676 - 30928775
Alignment:
| Q |
274 |
gacccacatttgggacaagctgaattcatattgatttgctacacgtggggcccacacgtttatgctagcctttgctccatagtattgatttccagtcaca |
373 |
Q |
| |
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|||||| ||||| |||||||||||||||| || || | ||||| |||| ||||||| ||||| |||||||||||||||||||| ||| |||||||||| |
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| T |
30928676 |
gacccatatttgagacaagctgaattcattttcatcttctacatgtggagcccacaaatttattgtagcctttgctccatagtatcgatctccagtcaca |
30928775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 40029556 - 40029482
Alignment:
| Q |
225 |
gccaaccagcttcaatggtgttgagatcatctccaaatgaaccagaaatgacccacatttgggacaagctgaattcat |
302 |
Q |
| |
|
|||||||||||||||| |||||||| || |||| |||||||| | ||||||| ||||| |||||||||||||||| |
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|
| T |
40029556 |
gccaaccagcttcaatagtgttgagttc---tccatctgaaccagcagtgacccatatttgagacaagctgaattcat |
40029482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 30908753 - 30908845
Alignment:
| Q |
281 |
atttgggacaagctgaattcatattgatttgctacacgtggggcccacacgtttatgctagcctttgctccatagtattgatttccagtcaca |
373 |
Q |
| |
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||||| |||||||||||||| | || | | | ||| |||||| ||||| ||||| |||||||||||||||||||| ||| |||||||||| |
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| T |
30908753 |
atttgagacaagctgaattctttttcaccttccacatgtggggaccacaaatttattgtagcctttgctccatagtatcgatctccagtcaca |
30908845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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