View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15587_low_1 (Length: 856)
Name: NF15587_low_1
Description: NF15587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15587_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 629
Target Start/End: Original strand, 5217542 - 5218171
Alignment:
| Q |
12 |
tcatcatttccaagtcatacatttcctcagatggtggatggtttatggacggtcagtgtttatccttcttagagtggaattcctttaacattgtttacct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5217542 |
tcatcatttccaagtcatacatttcctcagatggtggatggtttatggacggtcagtgtttatccttcttagagtggaattcctttaacattgtttacct |
5217641 |
T |
|
| Q |
112 |
gtatttttccataaaccatgataatgataattgagcaatttatcattnnnnnnnngcttacttttatcttgttttttgacctattattatgactaccaca |
211 |
Q |
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| T |
5217642 |
gtatttttccataaaccatgataatgataattgagcaatttatcatttaaaaaaagcttacttttatcttgtttttggacctattattatgactaccaca |
5217741 |
T |
|
| Q |
212 |
ttatcatatgatatcagcaaaattttagtggttcggttctgatacaagttgtgtggtgcgtgtctctttttgttacacaatgcagtgttccacgtcacgg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5217742 |
ttatcatatgatatcagcaaaattttagtggttcggttctgatacaagttgtgtggtgcgtgtctctttttgttacacaatgcagtgttccacgtcacgg |
5217841 |
T |
|
| Q |
312 |
atcaagctggcaagaagcttactgacaggaacctcatgcaccaaattgagaaggnnnnnnnngtctcttcctatcataaaatattttgtaccatactttt |
411 |
Q |
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| T |
5217842 |
atcaagctggcaagaagcttactgacaggaacctcatgcaccaaattgagaagg-tttttttgtctcttcctatcgtaaaatattttgtaccatactttt |
5217940 |
T |
|
| Q |
412 |
tgattgaatgtgtatctagtgt-caatgtgcgtccgtgtcata------------------ttattatagttaattatattattttctcagataattatc |
492 |
Q |
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| T |
5217941 |
t-attgaatgtatatctagtgtccaatgtgtgtccgtgtcatacattgatactgacatatgtcattacagttaattatattattttttcaaataattatt |
5218039 |
T |
|
| Q |
493 |
agttttaatgtgtcatttcggtgttgatttcgtgtttggtgtgtttctctattgttttaatcatatgaagtaactaattcaattatatgaaattaaacag |
592 |
Q |
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||||||||||||||||||| ||||||| | |||| | || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
5218040 |
ggttttaatgtgtcatttcgatgttgatgttatgttcgatgcgtttctcaattgtttcaatcatatgaagtaactaattcaattatatgaaattaaatag |
5218139 |
T |
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| Q |
593 |
aagatgtatatttacgttcacaggaactatgtgccac |
629 |
Q |
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| T |
5218140 |
a-----tgtatttatgttcataggaactatgtgccac |
5218171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 467 - 839
Target Start/End: Original strand, 5218285 - 5218657
Alignment:
| Q |
467 |
ttatattattttctcagataattatcagttttaatgtgtcatttcggtgttgatttcgtgtttggtgtgtttctctattgttttaatcatatgaagtaac |
566 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5218285 |
ttatatcattttctcagataattatcggttttaatgtgtcatttcggtgttgatttcgtgtttggtgtgtttctctattgttttaatcatatgaagtaac |
5218384 |
T |
|
| Q |
567 |
taattcaattatatgaaattaaacagaagatgtatatttacgttcacaggaactatgtgccacaagagcaaaagaggacatagatgatgaagaactccaa |
666 |
Q |
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| T |
5218385 |
taattcaattatatgaaattaaacagaagatgtatatttactttcacaggaactatgtgccacaagagcaaaagaggacatagatgatgaagaactccaa |
5218484 |
T |
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| Q |
667 |
ggctgcgcagaatattcacagtcaaaatactcaaaacaaattgtgtcaacggagaacacagcattggagatgagtgggatggatagaccaggcctactat |
766 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5218485 |
ggctgcgcagaatattcacagtcaaaatactcaaaacaaattgtgtcaacggagaacacagcattggagatgagtgggatggatagaccaggcctactat |
5218584 |
T |
|
| Q |
767 |
cagaaatatcagcggtgttggtgaacatgagctgcaatgtcacctcagcaacggcgtggacccacaatggaag |
839 |
Q |
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| T |
5218585 |
cagaaatatcagcagtgttggtgaacatgagctgcaatgtcacctcagcaacggcgtggacccacaatggaag |
5218657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 40128117 - 40128066
Alignment:
| Q |
17 |
atttccaagtcatacatttcctcagatggtggatggtttatggacggtcagt |
68 |
Q |
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|||||||| ||||||||||| || |||||||||||||| ||||| ||||||| |
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| T |
40128117 |
atttccaaatcatacatttcttctgatggtggatggttaatggatggtcagt |
40128066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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