View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15587_low_13 (Length: 374)
Name: NF15587_low_13
Description: NF15587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15587_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 46030505 - 46030141
Alignment:
| Q |
8 |
agtttttgtcttctttttgtcgatcatgttcttaatattgtatacttttgctctaatattttagtattttactatatcttgtacaggtcaaaaagaaatt |
107 |
Q |
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| T |
46030505 |
agtttttgtcttctttttgtcgatcatgttcttaatattgtatacttttgctctaatattttagtattttactatatcttgtacaggtcaaaaagaaatt |
46030406 |
T |
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| Q |
108 |
gggcaaagttatgttcaaccatgtatctctacttcatatgttaacgagggaatggataattaccagatctatgttgatccaatgccagacataagagaaa |
207 |
Q |
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| T |
46030405 |
gggcaaagttatgttcaaccatgtatctctacttcatatgttaatgagggaatggataattaccagatctatgttgatccaatgccagacataagagaaa |
46030306 |
T |
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| Q |
208 |
taccacaaaacaatcacgtggaaggtgaaatgtacattgatggggatggttatggatcacattttccagttgtagaaggtcgctattcgatggagaatct |
307 |
Q |
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| T |
46030305 |
taccacaaaacaatcacgtggaaggtgaaatgtacattgatggggatggttatggatcacattttccagttgtagaaggtcgctattcgatggagaatct |
46030206 |
T |
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| Q |
308 |
catgaatgactatcctatttatacaacatgtgagccagaaaattacaacttatatggtttctctg |
372 |
Q |
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| T |
46030205 |
catgaatgactatcctatttatacaacatgtgagccagaaaattacaacttatatggtttctctg |
46030141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 72 - 278
Target Start/End: Complemental strand, 46038560 - 46038354
Alignment:
| Q |
72 |
tattttactatatcttgtacaggtcaaaaagaaattgggcaaagttatgttcaaccatgtatctctacttcatatgttaacgagggaatggataattacc |
171 |
Q |
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| T |
46038560 |
tattttaccatatcttggacaggtcaaacagatatagggcaaggttatgttcaaccatgtatgtctacttcatatgttaacgaaggaatgcatgattacc |
46038461 |
T |
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| Q |
172 |
agatctatgttgatccaatgccagacataagagaaataccacaaaacaatcacgtggaaggtgaaatgtacattgatggggatggttatggatcacattt |
271 |
Q |
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| T |
46038460 |
aaatcaatcctgaaccagtgccagacataagagacataccacaaaacaatcatgtgggagctgaaatgtacatcgagggagatagtcatggatcacgctt |
46038361 |
T |
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| Q |
272 |
tccagtt |
278 |
Q |
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| T |
46038360 |
tccagtt |
46038354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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