View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15587_low_15 (Length: 368)

Name: NF15587_low_15
Description: NF15587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15587_low_15
NF15587_low_15
[»] chr2 (3 HSPs)
chr2 (6-367)||(39339392-39339750)
chr2 (18-105)||(31902957-31903044)
chr2 (41-92)||(2062256-2062307)
[»] chr7 (6 HSPs)
chr7 (6-321)||(47326431-47326746)
chr7 (25-165)||(38305600-38305741)
chr7 (25-108)||(3420239-3420322)
chr7 (36-88)||(12480291-12480344)
chr7 (26-125)||(37792712-37792811)
chr7 (26-126)||(38484956-38485055)
[»] chr3 (4 HSPs)
chr3 (11-177)||(20611134-20611300)
chr3 (37-165)||(19175844-19175972)
chr3 (22-126)||(1653493-1653597)
chr3 (6-56)||(17501794-17501844)
[»] chr4 (6 HSPs)
chr4 (25-185)||(30963782-30963944)
chr4 (25-124)||(16501154-16501253)
chr4 (48-192)||(35799931-35800076)
chr4 (28-126)||(31051234-31051332)
chr4 (31-69)||(4305075-4305113)
chr4 (28-77)||(46699512-46699561)
[»] chr8 (4 HSPs)
chr8 (25-165)||(34866637-34866778)
chr8 (25-165)||(34389593-34389734)
chr8 (18-126)||(10551708-10551816)
chr8 (25-95)||(9519052-9519122)
[»] chr1 (4 HSPs)
chr1 (25-188)||(41919798-41919963)
chr1 (37-165)||(24685101-24685229)
chr1 (58-124)||(13512990-13513055)
chr1 (28-72)||(24450450-24450494)
[»] chr6 (2 HSPs)
chr6 (25-126)||(16510868-16510969)
chr6 (26-107)||(12793536-12793617)
[»] chr5 (1 HSPs)
chr5 (28-126)||(27712380-27712478)


Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 6 - 367
Target Start/End: Original strand, 39339392 - 39339750
Alignment:
Q  6 agcagcacagatatagatatagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaagg 105  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  39339392 agcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcggtttgaagtgaaaacacaaccaaaatcatagaaagg 39339491  T
Q  106 cggccgccggtgacaaggagaggcgttcgtcgacagagtaaaagagaaccaatggtggagtgtaacggcggatctgaacaacatttctcctagccaccac 205  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39339492 cggccgccggtgacaaggagaggcgttcgtcggcggagtaaaagagaaccaatggtggagcgtaacggcggatctgaacaacatttctcctagccaccac 39339591  T
Q  206 cgaacactacaattgcaccaaaagcatctcacccatgaactcctattgcaaagctagctcaagaaactaggtacaccgcctcttaaaattaccaacgaca 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||    
T  39339592 cgaacactacaattgcaccaaaagcatctcacccatgaactcctattgcaaatctagctcaagaaactagtcacaccgcctcttaaaattaccaacgaca 39339691  T
Q  306 ataatcacctacaccacctttaacacaaaacaacatcaccatccaccaccttatgataaaaa 367  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  39339692 ataatcacctacaccacctttaacacaaaacaa---caccatccaccaccttatgataaaaa 39339750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 31902957 - 31903044
Alignment:
Q  18 atagatatagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaagg 105  Q
    |||||| |||||||||| |||| |||||||||||||||| |||||||||||| ||||||| | |||||||||| | |||||| |||||    
T  31902957 atagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccggtttgaagcggaaacacaacctagatcataaaaagg 31903044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 2062307 - 2062256
Alignment:
Q  41 ccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaaccca 92  Q
    |||||||||||||||| |||||||||||| | ||||| | ||||||||||||    
T  2062307 ccaacaacaaaacacgggcagcgacgccggtctgaagcggaaacacaaccca 2062256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 47326431 - 47326746
Alignment:
Q  6 agcagcacagatatagatatagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaagg 105  Q
    |||| |||| |||| ||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||||||||||    
T  47326431 agcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccgatttgaagtgaaaacacaaccgaaatcatagaaagg 47326530  T
Q  106 cggccgccggtgacaaggagaggcgttcgtcgacagagtaaaagagaaccaatggtggagtgtaacggcggatctgaacaacatttctcctagccaccac 205  Q
    |||||||||||||||||||||||||   |||| | ||||||||||||||||||||||||| | ||||| |||||||| ||||||||| ||||||||||||    
T  47326531 cggccgccggtgacaaggagaggcgactgtcggcggagtaaaagagaaccaatggtggagcgaaacggtggatctgagcaacatttcccctagccaccac 47326630  T
Q  206 cgaacactacaattgcaccaaaagcatctcacccatgaactcctattgcaaagctagctcaagaaactaggtacaccgcctcttaaaattaccaacgaca 305  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||||||| |||||||||    
T  47326631 caaacactacaattgcaccaaaagcatctcacccatgaactcctattccaaagctagcttaagaaactagccacaccgcctcttaaaatttccaacgaca 47326730  T
Q  306 ataatcacctacacca 321  Q
    ||||||||||||||||    
T  47326731 ataatcacctacacca 47326746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 38305741 - 38305600
Alignment:
Q  25 tagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaagga 124  Q
    |||||||||| ||||||||||||||||||||  ||||| |||||| ||||||| | || ||||||||| |||||  ||||||||||| | ||||||| ||    
T  38305741 tagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacccatatcatttaaaggcggccgactgtgacaacga 38305642  T
Q  125 g-aggcgttcgtcgacagagtaaaagagaaccaatggtggag 165  Q
    | | |||||||||| |  ||||||||||| ||||||||||||    
T  38305641 gaatgcgttcgtcgccgtagtaaaagagagccaatggtggag 38305600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 3420239 - 3420322
Alignment:
Q  25 tagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcgg 108  Q
    |||||||||| |||| | ||||||||||||||||||||||||||| || |||| | || ||||||| | |||||| ||||||||    
T  3420239 tagaggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatcataaaaaggcgg 3420322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 12480344 - 12480291
Alignment:
Q  36 gaaatccaacaacaaaacacgagcagcgacgccgttttgaagt-gaaaacacaa 88  Q
    |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12480344 gaaaaccaacaacaaaacacgagcagcgacgccggtttgaagtggaaaacacaa 12480291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 37792811 - 37792712
Alignment:
Q  26 agaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaaggag 125  Q
    |||| |||| |||| |||||| |||||||||  || |||||||| ||||||| | |||||||||||| ||| || ||||||   ||||||||||||||||    
T  37792811 agagaaagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacccatatcgtaaaaaggcaatcgccggtgacaaggag 37792712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 38485055 - 38484956
Alignment:
Q  26 agaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaaggag 125  Q
    ||||||||| |||| |  ||||||||||| | |||||||||||| ||||||| | |||||||||||  ||| || ||||| ||||| | |||||||||||    
T  38485055 agaggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaaccc-catcgtaaaaaggtggccgtcagtgacaaggag 38484957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 20611300 - 20611134
Alignment:
Q  11 cacagatatagatatagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggcc 110  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||||||||||||    
T  20611300 cacaaatatagatctagatgaagaggaaatccaacaacaaaacacgagcagcgacgtcggtttgaagtgaaagcacaaccaaaatcatagaaaggcggcc 20611201  T
Q  111 gccggtgacaaggagaggcgttcgtcgacagagtaaaagagaaccaatggtggagtgtaacggcgga 177  Q
    |||| |||||||||||||||||||||| | ||||||||||||||||||||||||| | |||||||||    
T  20611200 gccgatgacaaggagaggcgttcgtcggcggagtaaaagagaaccaatggtggagcgaaacggcgga 20611134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 19175972 - 19175844
Alignment:
Q  37 aaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaaggag-aggcgttcgt 135  Q
    |||||||||||||||||||| ||||||| |||| ||||||| | || ||||||||| |||||| |||||| |||||| ||||||||||| | || |||||    
T  19175972 aaatccaacaacaaaacacgggcagcgatgccggtttgaagaggaaccacaacccatatcataaaaaggcagccgcctgtgacaaggagaatgcattcgt 19175873  T
Q  136 cgacagagtaaaagagaaccaatggtggag 165  Q
    || |  ||||||| ||||||||||||||||    
T  19175872 cgccgtagtaaaa-agaaccaatggtggag 19175844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 1653493 - 1653597
Alignment:
Q  22 atatagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaa 121  Q
    |||| |||||||| ||||||||||||||||||||| ||| |||||||| ||||||| ||||| |||||||| ||| ||  ||||  |||||| |||||||    
T  1653493 atatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagcgaaaagacaacccagatcgtaacaaggttgccgccagtgacaa 1653592  T
Q  122 ggaga 126  Q
    |||||    
T  1653593 ggaga 1653597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 17501794 - 17501844
Alignment:
Q  6 agcagcacagatatagatatagaggaagaggaaatccaacaacaaaacacg 56  Q
    |||| |||| |||||||| |||||||||| |||||| ||||||||||||||    
T  17501794 agcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacg 17501844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 30963944 - 30963782
Alignment:
Q  25 tagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaagga 124  Q
    |||||||||| |||||||||| |||||||||| ||| |||||||| ||||||||| || ||||||||| |||||| ||||  || |||| ||||||||||    
T  30963944 tagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacccagatcataaaaagatggtcgcctgtgacaagga 30963845  T
Q  125 g-aggcgttcgtcgacagagtaaaagagaaccaatggtggag-tgtaacggcggatctgaaca 185  Q
    | | ||||||||||    ||||||||||||||||||||||||    |||||||||||||||||    
T  30963844 gaatgcgttcgtcgttgtagtaaaagagaaccaatggtggagaaaaaacggcggatctgaaca 30963782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 16501253 - 16501154
Alignment:
Q  25 tagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaagga 124  Q
    ||||||||||  ||| ||||||||| |||| | |||||||||||| ||||||||| || ||||||||||||| || |||| |||||||||||||||||||    
T  16501253 tagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaagtggaatcacaacccaaatcgtataaagacggccgccggtgacaagga 16501154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 35800076 - 35799931
Alignment:
Q  48 caaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaaggaga-ggcgttcgtcgacagagtaa 146  Q
    ||||||||| ||| |||||||| ||||||  | ||||| |||||| | | || |||||||| || |||| ||||||||| ||||| ||||  | |||||     
T  35800076 caaaacacgggcaacgacgccgatttgaaacggaaacataacccataacgtaaaaaggcggtcgtcggtaacaaggagaaggcgtccgtcaccggagtac 35799977  T
Q  147 aagagaaccaatggtggagtgtaacggcggatctgaacaacatttc 192  Q
    ||||||||||||||||||| | |||| |||||||||||| ||||||    
T  35799976 aagagaaccaatggtggagcgaaacgacggatctgaacagcatttc 35799931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 31051234 - 31051332
Alignment:
Q  28 aggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaaggaga 126  Q
    ||||||| | || |||||||||||||||| |||||||||||| | ||||| | | |||||||||||||| || |||||||||| ||| | |||||||||    
T  31051234 aggaagatgtaacccaacaacaaaacacgggcagcgacgccggtctgaagcggacacacaacccaaatcgtaaaaaggcggccaccgataacaaggaga 31051332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 4305113 - 4305075
Alignment:
Q  31 aagaggaaatccaacaacaaaacacgagcagcgacgccg 69  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  4305113 aagacgaaatccaacaacaaaacacgggcagcgacgccg 4305075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 46699512 - 46699561
Alignment:
Q  28 aggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaag 77  Q
    ||||||| ||| ||||||||||| ||||| |||||||||||| |||||||    
T  46699512 aggaagatgaattccaacaacaatacacgggcagcgacgccgatttgaag 46699561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 34866637 - 34866778
Alignment:
Q  25 tagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaagga 124  Q
    |||||||||| ||||||||||||||||||||| |||||||||||| ||||||| | || |||||||||  ||||| |||||||| |||| ||||||||||    
T  34866637 tagaggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacccaggtcataaaaaggcggtcgcctgtgacaagga 34866736  T
Q  125 gag-gcgttcgtcgacagagtaaaagagaaccaatggtggag 165  Q
    ||  |  ||||||| |  |||||||||||| |||||||||||    
T  34866737 gaatgttttcgtcgccgtagtaaaagagaatcaatggtggag 34866778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 34389593 - 34389734
Alignment:
Q  25 tagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaagga 124  Q
    ||||||| || ||||| | ||||||||||||| |||||||||||| ||||||| | || ||||||||| |||||   || ||||| ||| ||||||||||    
T  34389593 tagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcatgacaaagcggctgcctgtgacaagga 34389692  T
Q  125 g-aggcgttcgtcgacagagtaaaagagaaccaatggtggag 165  Q
    | | | |||||||| |  ||||||||||||||||||||||||    
T  34389693 gaatgtgttcgtcgccgtagtaaaagagaaccaatggtggag 34389734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 10551816 - 10551708
Alignment:
Q  18 atagatatagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtg 117  Q
    |||||| |||||||||| |||| ||||||||||| |||| |||||||||||| ||||||| | |||||| ||||  |||||| |||||| | || |||||    
T  10551816 atagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaaacacgaccccgatcataaaaaggctgtcgtcggtg 10551717  T
Q  118 acaaggaga 126  Q
    |||||||||    
T  10551716 acaaggaga 10551708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 9519122 - 9519052
Alignment:
Q  25 tagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaat 95  Q
    ||||| |||| |||| |||||||||||||||| |||||||||| | ||||||| |  ||||||||||||||    
T  9519122 tagagaaagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaat 9519052  T

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Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 41919963 - 41919798
Alignment:
Q  25 tagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaagga 124  Q
    |||||||||| ||||||| ||||||||||||| ||| |||||| | ||||||| | || ||||||||| |||||  || |||||| ||| ||||||||||    
T  41919963 tagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacccagatcattaaatggcggcagcctgtgacaagga 41919864  T
Q  125 gag-gcgttcgtcgacagagtaaaagagaaccaatggtggag-tgtaacggcggatctgaacaaca 188  Q
    ||  | |||||| | |  ||||||||||||||||||||||||    ||||||||||||||||||||    
T  41919863 gaatgtgttcgttgccgtagtaaaagagaaccaatggtggagcaaaaacggcggatctgaacaaca 41919798  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 24685101 - 24685229
Alignment:
Q  37 aaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaaggag-aggcgttcgt 135  Q
    |||| ||||||||||||||| |||||||||||| |||||||   || ||||||||| |||||| ||||  ||||||| ||||||||||| | | ||||||    
T  24685101 aaattcaacaacaaaacacgggcagcgacgccggtttgaagcagaaccacaacccatatcataaaaagctggccgcctgtgacaaggagaatgtgttcgt 24685200  T
Q  136 cgacagagtaaaagagaaccaatggtggag 165  Q
    || |  ||||||| ||||||||||||||||    
T  24685201 cgccgtagtaaaa-agaaccaatggtggag 24685229  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 13513055 - 13512990
Alignment:
Q  58 gcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaagga 124  Q
    ||||| |||||| |||||| || |||||||||||||| |||| |||||| |||||||||||||||||    
T  13513055 gcagcaacgccggtttgaaatggaaacacaacccaaa-catataaaggcagccgccggtgacaagga 13512990  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 24450450 - 24450494
Alignment:
Q  28 aggaagaggaaatccaacaacaaaacacgagcagcgacgccgttt 72  Q
    ||||||| |||| |||||||||||||||| |||||||||| ||||    
T  24450450 aggaagatgaaacccaacaacaaaacacgggcagcgacgcagttt 24450494  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 16510868 - 16510969
Alignment:
Q  25 tagaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaagga 124  Q
    |||||||||| || |||||||||||||||||| ||||||| |||| |||||||   || ||||||||| |||||| |||||| | |||  ||||||||||    
T  16510868 tagaggaagacgacatccaacaacaaaacacgggcagcgatgccggtttgaagcagaaccacaacccatatcataaaaaggcagtcgcttgtgacaagga 16510967  T
Q  125 ga 126  Q
    ||    
T  16510968 ga 16510969  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 12793617 - 12793536
Alignment:
Q  26 agaggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcg 107  Q
    ||||||||| |||||||| || ||||||||| ||| |||||||  ||||||| |||||||||||||| ||| || |||||||    
T  12793617 agaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaagcgaaaacacaacccatatcgtaaaaaggcg 12793536  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 27712478 - 27712380
Alignment:
Q  28 aggaagaggaaatccaacaacaaaacacgagcagcgacgccgttttgaagtgaaaacacaacccaaatcatagaaaggcggccgccggtgacaaggaga 126  Q
    ||||||| |||| |||||||||||||||| ||| |||||||| | ||||||  |||||||| | | ||| || | ||||  || |||||||||||||||    
T  27712478 aggaagatgaaacccaacaacaaaacacgggcaacgacgccggtctgaagtagaaacacaatctagatcgtaaacaggcaaccaccggtgacaaggaga 27712380  T

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