View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15587_low_16 (Length: 338)

Name: NF15587_low_16
Description: NF15587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15587_low_16
NF15587_low_16
[»] chr7 (14 HSPs)
chr7 (1-306)||(45040882-45041172)
chr7 (29-102)||(44558765-44558838)
chr7 (43-102)||(8261433-8261493)
chr7 (38-101)||(9522918-9522982)
chr7 (29-93)||(35142149-35142213)
chr7 (40-102)||(24099226-24099288)
chr7 (38-92)||(38553824-38553878)
chr7 (27-93)||(44651496-44651562)
chr7 (27-81)||(48069849-48069903)
chr7 (29-93)||(4491115-4491180)
chr7 (36-93)||(7908597-7908654)
chr7 (41-101)||(1311794-1311854)
chr7 (39-87)||(14623491-14623539)
chr7 (25-73)||(31885965-31886013)
[»] chr3 (11 HSPs)
chr3 (30-83)||(49088750-49088803)
chr3 (29-102)||(20370272-20370345)
chr3 (27-90)||(5117203-5117266)
chr3 (29-92)||(53162195-53162258)
chr3 (30-72)||(51379800-51379842)
chr3 (36-90)||(51505877-51505931)
chr3 (29-90)||(7829893-7829954)
chr3 (38-95)||(17507697-17507754)
chr3 (30-87)||(29791774-29791831)
chr3 (38-91)||(48688121-48688173)
chr3 (38-102)||(52575953-52576018)
[»] chr2 (10 HSPs)
chr2 (27-92)||(35327351-35327416)
chr2 (29-93)||(42475110-42475174)
chr2 (36-102)||(16221336-16221403)
chr2 (37-91)||(27871993-27872047)
chr2 (55-93)||(27889312-27889350)
chr2 (30-102)||(32957533-32957606)
chr2 (27-80)||(41672297-41672350)
chr2 (27-71)||(7121782-7121826)
chr2 (29-73)||(17736790-17736834)
chr2 (36-72)||(29133505-29133541)
[»] chr4 (6 HSPs)
chr4 (29-102)||(51002284-51002357)
chr4 (27-87)||(22578921-22578982)
chr4 (29-93)||(2430994-2431058)
chr4 (27-93)||(18903758-18903824)
chr4 (29-93)||(35021467-35021531)
chr4 (39-87)||(46434766-46434814)
[»] chr5 (8 HSPs)
chr5 (36-95)||(39143718-39143777)
chr5 (29-91)||(2705518-2705580)
chr5 (29-102)||(32559301-32559375)
chr5 (29-81)||(16193104-16193156)
chr5 (29-102)||(28207129-28207203)
chr5 (30-102)||(7713530-7713602)
chr5 (27-91)||(23118053-23118117)
chr5 (27-102)||(32283574-32283650)
[»] chr8 (8 HSPs)
chr8 (27-73)||(26885658-26885704)
chr8 (29-102)||(39433407-39433481)
chr8 (27-72)||(37750020-37750065)
chr8 (29-100)||(10152453-10152525)
chr8 (31-90)||(10320495-10320554)
chr8 (38-92)||(24429805-24429859)
chr8 (36-93)||(13284265-13284322)
chr8 (29-93)||(32555251-32555315)
[»] chr6 (5 HSPs)
chr6 (29-101)||(34828303-34828377)
chr6 (29-102)||(4494862-4494935)
chr6 (38-93)||(12329282-12329337)
chr6 (30-71)||(14350947-14350988)
chr6 (36-93)||(24623317-24623374)
[»] chr1 (16 HSPs)
chr1 (27-93)||(21041339-21041405)
chr1 (29-93)||(2613719-2613783)
chr1 (29-93)||(29233974-29234038)
chr1 (55-102)||(31426784-31426832)
chr1 (30-78)||(45701326-45701374)
chr1 (36-79)||(17917152-17917195)
chr1 (56-102)||(29251778-29251824)
chr1 (38-92)||(50372362-50372416)
chr1 (38-102)||(14520950-14521015)
chr1 (29-78)||(26834517-26834566)
chr1 (36-72)||(3393589-3393625)
chr1 (29-93)||(3693796-3693860)
chr1 (55-102)||(4715548-4715596)
chr1 (42-102)||(4770619-4770679)
chr1 (30-86)||(20711212-20711268)
chr1 (29-73)||(43840345-43840389)
[»] scaffold0012 (1 HSPs)
scaffold0012 (29-101)||(118816-118888)
[»] scaffold0053 (1 HSPs)
scaffold0053 (25-87)||(14193-14255)


Alignment Details
Target: chr7 (Bit Score: 171; Significance: 8e-92; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 45041172 - 45040882
Alignment:
Q  1 ttgtaaatagaaaatgttctctactattctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacccggccacc 100  Q
    ||||||||||||||||||||| ||| |||||| | | ||| |||||||||||||||||||||||         ||||      |||||||||||||||||    
T  45041172 ttgtaaatagaaaatgttctccactgttctcgcgagcttaactcagttgatattaacaatgcat---------tagg------gttcgaacccggccacc 45041088  T
Q  101 acnnnnnnnngaagaggttctctactcattttaactcaaagttttagaggcaactaacacactttcaatcttcaatggagtcctctgatcgtaacatggt 200  Q
    ||         ||||||||||||||| |||||||  |||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45041087 accaaaaaaaaaagaggttctctacttattttaatccaaaatttcagaggcaactaacacactttcaatcttcaatggagtcctccgatcgtaacatggt 45040988  T
Q  201 atatacgcttatatggtttcaaaaaatttcatcgatttttctttatgacgcaacaacaaaacaattatttttgctaggtataagttcttgtttacgtgta 300  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45040987 atatacgcttatatggtttcaaaaaaattcatcgatttttctttatgacgcaacaacaaaacaattatttttgctaggtataagttcttgtttacgtgta 45040888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 44558838 - 44558765
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacccggccaccac 102  Q
    |||||| |||||||||||||| |||  ||||||||||| |||||  |||| ||||||| || ||||||||||||    
T  44558838 ctcgtgagtttagctcagttggtatggacaatgcataatatatgcaaggtctgaggtttgaccccggccaccac 44558765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 8261493 - 8261433
Alignment:
Q  43 tcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaa-cccggccaccac 102  Q
    ||||||| |||  |||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  8261493 tcagttggtatagacaatgcataaaatatgtaaggtttggggttcgaatcccggccaccac 8261433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 9522918 - 9522982
Alignment:
Q  38 ttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaa-cccggccacca 101  Q
    |||||||||||| ||| |||||||||||| |||||  ||||||| |||||||| |||||||||||    
T  9522918 ttagctcagttggtatgaacaatgcataatatatgcaaggtttggggttcgaaccccggccacca 9522982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 35142213 - 35142149
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    |||||| | ||||||||||||||||  ||||||||||| |||||  | |||||||||||||||||    
T  35142213 ctcgtgagcttagctcagttgatatggacaatgcataatatatgcaaagtttgaggttcgaaccc 35142149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 24099288 - 24099226
Alignment:
Q  40 agctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacccggccaccac 102  Q
    |||||| ||||||| |||||||||||| |||||| ||||| | |||| ||||||| |||||||    
T  24099288 agctcaattgatataaacaatgcataatatatgtaaggttcggggtttgaacccgaccaccac 24099226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 38553824 - 38553878
Alignment:
Q  38 ttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacc 92  Q
    |||||||||||| ||  |||||||||||| |||||| ||||||| ||||||||||    
T  38553824 ttagctcagttggtaagaacaatgcataatatatgtaaggtttggggttcgaacc 38553878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 44651496 - 44651562
Alignment:
Q  27 ttctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    |||||||| |||||||||||||| |||  ||  |||||||||||||| ||||||| ||||| |||||    
T  44651496 ttctcgtgagtttagctcagttggtatggaccttgcataaaatatgtaaggtttggggttcaaaccc 44651562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 48069903 - 48069849
Alignment:
Q  27 ttctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttg 81  Q
    |||||||| | ||||||||||||| || |||||||||||| |||||| |||||||    
T  48069903 ttctcgtgagcttagctcagttgacatgaacaatgcataatatatgtaaggtttg 48069849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 4491180 - 4491115
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaa-atatgttaggtttgaggttcgaaccc 93  Q
    |||||| | ||||||||||||||| |||||||||||||| |||||  | || ||||||||||||||    
T  4491180 ctcgtgagcttagctcagttgatagtaacaatgcataaatatatgccaagtctgaggttcgaaccc 4491115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 7908597 - 7908654
Alignment:
Q  36 gtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    |||||| ||||||| |||  |||||||||||||||||| ||||| | |||||||||||    
T  7908597 gtttagttcagttggtatggacaatgcataaaatatgtaaggttcggggttcgaaccc 7908654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 1311854 - 1311794
Alignment:
Q  41 gctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacccggccacca 101  Q
    |||||||||||||  |||||||||||||||||  |||||| ||||||| ||| ||| ||||    
T  1311854 gctcagttgatatggacaatgcataaaatatgcaaggtttaaggttcggacctggctacca 1311794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 14623539 - 14623491
Alignment:
Q  39 tagctcagttgatattaacaatgcataaaatatgttaggtttgaggttc 87  Q
    ||||||| |||||||  |||||||||||||||||| ||||||| |||||    
T  14623539 tagctcatttgatatggacaatgcataaaatatgtaaggtttggggttc 14623491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 31886013 - 31885965
Alignment:
Q  25 tattctcgtgggtttagctcagttgatattaacaatgcataaaatatgt 73  Q
    |||||||||| |||||| ||||||| ||| |||||||||||| ||||||    
T  31886013 tattctcgtgagtttagttcagttggtatgaacaatgcataatatatgt 31885965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 49088750 - 49088803
Alignment:
Q  30 tcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgag 83  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| |||||||||    
T  49088750 tcgtgagtttagctcagttgatataaacaatgcataaaatatgtaaggtttgag 49088803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 20370345 - 20370272
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacccggccaccac 102  Q
    |||||| | ||||||||||||||||  |||||||||||||||||  ||||||  ||||||||||| ||||||||    
T  20370345 ctcgtgagcttagctcagttgatatggacaatgcataaaatatgcaaggtttagggttcgaacccagccaccac 20370272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 5117203 - 5117266
Alignment:
Q  27 ttctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaa 90  Q
    |||||||| | |||||||||||||||   ||||| ||||| |||||| ||||||||||||||||    
T  5117203 ttctcgtgagcttagctcagttgataaggacaatacataatatatgtaaggtttgaggttcgaa 5117266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 53162195 - 53162258
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacc 92  Q
    |||||| | |||||||| |||||||  |||||||||||||||||  ||||||||||||| ||||    
T  53162195 ctcgtgagcttagctcaattgatatggacaatgcataaaatatgcaaggtttgaggttcaaacc 53162258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 51379842 - 51379800
Alignment:
Q  30 tcgtgggtttagctcagttgatattaacaatgcataaaatatg 72  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||    
T  51379842 tcgtgagtttacctcagttgatatgaacaatgcataaaatatg 51379800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 51505877 - 51505931
Alignment:
Q  36 gtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaa 90  Q
    ||||||||||||||||||  |||||||||||||||||  ||||||| | ||||||    
T  51505877 gtttagctcagttgatatggacaatgcataaaatatgcaaggtttgggattcgaa 51505931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 7829893 - 7829954
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaa 90  Q
    |||||| ||||| ||||||||||||  ||||||||||| |||||| |||| ||| |||||||    
T  7829893 ctcgtgagtttaactcagttgatatggacaatgcataatatatgtaaggtctgaagttcgaa 7829954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 17507754 - 17507697
Alignment:
Q  38 ttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacccgg 95  Q
    ||||||||||||||||| ||||||||||| |||||  ||||| | | |||||||||||    
T  17507754 ttagctcagttgatattgacaatgcataatatatgcaaggttcgggattcgaacccgg 17507697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 29791774 - 29791831
Alignment:
Q  30 tcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttc 87  Q
    ||||| ||||| |||||||||||  |||||| ||||| |||||| |||||||||||||    
T  29791774 tcgtgagtttaactcagttgatagaaacaatacataatatatgtaaggtttgaggttc 29791831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 48688121 - 48688173
Alignment:
Q  38 ttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaac 91  Q
    |||||||||||| ||| | |||||||||| |||||| |||||||||||||||||    
T  48688121 ttagctcagttggtatga-caatgcataatatatgtaaggtttgaggttcgaac 48688173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 52575953 - 52576018
Alignment:
Q  38 ttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaa-cccggccaccac 102  Q
    |||||||||||| ||| ||||||||||||||||||  |||| || |||||||| |||| |||||||    
T  52575953 ttagctcagttggtatgaacaatgcataaaatatgcaaggtctggggttcgaatcccgaccaccac 52576018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 35327351 - 35327416
Alignment:
Q  27 ttctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacc 92  Q
    |||||||| ||||| |||||||||||| ||||||| |||||||||||||||| | |||||||||||    
T  35327351 ttctcgtgagtttaactcagttgatatgaacaatgtataaaatatgttaggtctaaggttcgaacc 35327416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 42475174 - 42475110
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    |||||| | ||| |||||||| ||| ||||||||||||||||||  |||| ||||||||||||||    
T  42475174 ctcgtgagcttaactcagttggtataaacaatgcataaaatatgcaaggtctgaggttcgaaccc 42475110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 16221403 - 16221336
Alignment:
Q  36 gtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaa-cccggccaccac 102  Q
    |||||||||||||| ||| ||||||||||||||||||  ||||| | |||||||| ||| ||||||||    
T  16221403 gtttagctcagttggtatgaacaatgcataaaatatgcaaggttcggggttcgaatccccgccaccac 16221336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 27872047 - 27871993
Alignment:
Q  37 tttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaac 91  Q
    |||||||||||| |||  ||||||| ||||||||||  |||||||||||||||||    
T  27872047 tttagctcagttcatacgaacaatgtataaaatatgcaaggtttgaggttcgaac 27871993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 27889312 - 27889350
Alignment:
Q  55 aacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  27889312 aacaatgcataaaatatgtaaggtttgaggttcaaaccc 27889350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 32957606 - 32957533
Alignment:
Q  30 tcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacc-cggccaccac 102  Q
    ||||| ||||||||| |||| ||| |||||||||||| |||||| ||||||| ||||  |||| ||||||||||    
T  32957606 tcgtgagtttagctcggttggtatgaacaatgcataatatatgtaaggtttggggtttaaacctcggccaccac 32957533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 41672350 - 41672297
Alignment:
Q  27 ttctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggttt 80  Q
    |||||||  |||||| ||||||| ||| ||||||||||||||||||| ||||||    
T  41672350 ttctcgttagtttagttcagttggtataaacaatgcataaaatatgtaaggttt 41672297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 7121826 - 7121782
Alignment:
Q  27 ttctcgtgggtttagctcagttgatattaacaatgcataaaatat 71  Q
    |||||||| ||||| |||| ||||||| |||||||||||||||||    
T  7121826 ttctcgtgagtttaactcaattgatataaacaatgcataaaatat 7121782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 17736790 - 17736834
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgt 73  Q
    |||||| | |||||||||||| ||| |||||||||||||||||||    
T  17736790 ctcgtgagcttagctcagttggtatgaacaatgcataaaatatgt 17736834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 29133541 - 29133505
Alignment:
Q  36 gtttagctcagttgatattaacaatgcataaaatatg 72  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  29133541 gtttagctcagttggtatgaacaatgcataaaatatg 29133505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 51002284 - 51002357
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacccggccaccac 102  Q
    |||||| | ||| |||||||| |||  |||||||||||||||||  |||||||||||||||| |||||||||||    
T  51002284 ctcgtgagcttaactcagttggtatagacaatgcataaaatatgcaaggtttgaggttcgaatccggccaccac 51002357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 22578921 - 22578982
Alignment:
Q  27 ttctcgtgggtttagctcagttgatattaacaatgcat-aaaatatgttaggtttgaggttc 87  Q
    ||||||||||||||| ||||||||||| ||||||| || ||||||||| |||| ||||||||    
T  22578921 ttctcgtgggtttagttcagttgatatgaacaatgtataaaaatatgtaaggtctgaggttc 22578982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 2430994 - 2431058
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    |||||| |||||||||||||| |||| ||||| |||||||||||  |||| |||||||| |||||    
T  2430994 ctcgtgagtttagctcagttggtattgacaatacataaaatatgcaaggtatgaggttcaaaccc 2431058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 18903824 - 18903758
Alignment:
Q  27 ttctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    |||||||| |||||||||||||||||  || ||||||||| |||||| |||| || ||||| |||||    
T  18903824 ttctcgtgagtttagctcagttgataaaaataatgcataatatatgtaaggtctggggttcaaaccc 18903758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 35021531 - 35021467
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    |||||| | ||||||||||||||||  ||||| |||||||||||  ||||| | |||||||||||    
T  35021531 ctcgtgagcttagctcagttgatatggacaatacataaaatatgcaaggttcggggttcgaaccc 35021467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 46434814 - 46434766
Alignment:
Q  39 tagctcagttgatattaacaatgcataaaatatgttaggtttgaggttc 87  Q
    ||||||||||||||   ||||||||||| |||||| |||||||||||||    
T  46434814 tagctcagttgataaggacaatgcataatatatgtaaggtttgaggttc 46434766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 39143718 - 39143777
Alignment:
Q  36 gtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacccgg 95  Q
    |||||||||||||| |||  ||| ||||||| |||||| |||||||||||||||||||||    
T  39143718 gtttagctcagttggtatggacattgcataatatatgtaaggtttgaggttcgaacccgg 39143777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 2705580 - 2705518
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaac 91  Q
    ||||||| ||||||||||||||||  |||||| ||||| |||||| |||| ||||||||||||    
T  2705580 ctcgtggatttagctcagttgataagaacaatacataatatatgtaaggtctgaggttcgaac 2705518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 32559301 - 32559375
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaa-cccggccaccac 102  Q
    |||||| | |||||||| |||||||| |||||||||||||||||| |||| || ||||| || ||||||||||||    
T  32559301 ctcgtgagcttagctcaattgatattgacaatgcataaaatatgtaaggtctggggttcaaatcccggccaccac 32559375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 16193104 - 16193156
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttg 81  Q
    |||||| |||||| ||||||| ||| ||||||||||||||||||| |||||||    
T  16193104 ctcgtgagtttagttcagttggtatgaacaatgcataaaatatgtaaggtttg 16193156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 28207129 - 28207203
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaa-cccggccaccac 102  Q
    |||||| | |||||||||||| |||  |||||||||||||||||  ||||  |||||||||| ||||||||||||    
T  28207129 ctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaaggtccgaggttcgaatcccggccaccac 28207203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 7713530 - 7713602
Alignment:
Q  30 tcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacccggccaccac 102  Q
    ||||| ||||| |||||||||||| || ||||||||| |||||  |||||||  |||| |||||| |||||||    
T  7713530 tcgtgagtttaactcagttgatatgaataatgcataatatatgcaaggtttggagttcaaacccgaccaccac 7713602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 23118117 - 23118053
Alignment:
Q  27 ttctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaac 91  Q
    |||||||| | ||| |||||||||||   ||||||||||| |||||| ||||||| |||||||||    
T  23118117 ttctcgtgagcttaactcagttgataaggacaatgcataatatatgtaaggtttggggttcgaac 23118053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 32283574 - 32283650
Alignment:
Q  27 ttctcgtgggtttagctcagttgatattaacaatgcataa-aatatgttaggtttgaggttcgaacccggccaccac 102  Q
    |||||||| | |||||||||||| |||  ||||||||||| ||||||| |||| ||| ||||||| ||| |||||||    
T  32283574 ttctcgtgagcttagctcagttggtatggacaatgcataataatatgtaaggtctgaagttcgaatccgaccaccac 32283650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 26885704 - 26885658
Alignment:
Q  27 ttctcgtgggtttagctcagttgatattaacaatgcataaaatatgt 73  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||||    
T  26885704 ttctcgtgagtttagctcagttggtatgaacaatgcataaaatatgt 26885658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 39433407 - 39433481
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaac-ccggccaccac 102  Q
    |||||| | |||||||||||||||| |||||| |||||||||||  |||| || ||||||||| |||||||||||    
T  39433407 ctcgtgagcttagctcagttgatatgaacaatacataaaatatgcaaggtctggggttcgaacgccggccaccac 39433481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 37750065 - 37750020
Alignment:
Q  27 ttctcgtgggtttagctcagttgatattaacaatgcataaaatatg 72  Q
    |||||||| |||||||||||||||||| |||||||||||| |||||    
T  37750065 ttctcgtgagtttagctcagttgatatgaacaatgcataatatatg 37750020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 10152453 - 10152525
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaac-ccggccacc 100  Q
    |||||| | |||||||||||| |||  |||||| ||||||||||  ||||||||||||||||| |||||||||    
T  10152453 ctcgtgagcttagctcagttggtatagacaatgtataaaatatgcaaggtttgaggttcgaactccggccacc 10152525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 10320495 - 10320554
Alignment:
Q  31 cgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaa 90  Q
    |||| |||||||||||||||||  || ||||||||| |||||| |||| |||||||||||    
T  10320495 cgtgagtttagctcagttgataagaataatgcataatatatgtaaggtatgaggttcgaa 10320554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 24429805 - 24429859
Alignment:
Q  38 ttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacc 92  Q
    |||||||| |||||||  |||||||||||||||||| ||||| | ||||||||||    
T  24429805 ttagctcacttgatatggacaatgcataaaatatgtaaggttcggggttcgaacc 24429859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 13284322 - 13284265
Alignment:
Q  36 gtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    ||||| |||||||||||| ||||||| |||| |||| | ||||||||||||| |||||    
T  13284322 gtttaactcagttgatatgaacaatgtataatatatataaggtttgaggttcaaaccc 13284265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 32555251 - 32555315
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    |||||| |||||||| ||||| |||  |||||||||||||||||  |||||  ||||||||||||    
T  32555251 ctcgtgagtttagcttagttggtatggacaatgcataaaatatgcaaggttcaaggttcgaaccc 32555315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 34828303 - 34828377
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataa-aatatgttaggtttgaggttcgaa-cccggccacca 101  Q
    |||||| |||||||||||||| |||  ||||||||||| ||||||| |||| ||||||||||| |||||||||||    
T  34828303 ctcgtgagtttagctcagttggtatggacaatgcataataatatgtaaggtctgaggttcgaaccccggccacca 34828377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 4494935 - 4494862
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacccggccaccac 102  Q
    |||||| | |||||||||||| |||  |||||||||||||||||  |||| || | ||||||||||||||||||    
T  4494935 ctcgtgagcttagctcagttggtatggacaatgcataaaatatgcgaggtctgggattcgaacccggccaccac 4494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 12329282 - 12329337
Alignment:
Q  38 ttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    |||||||||||| ||| |||||| |||||||||||| |||||  ||||||||||||    
T  12329282 ttagctcagttgttatgaacaatacataaaatatgtaaggttccaggttcgaaccc 12329337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 14350947 - 14350988
Alignment:
Q  30 tcgtgggtttagctcagttgatattaacaatgcataaaatat 71  Q
    ||||| ||||| |||||||||||| |||||||||||||||||    
T  14350947 tcgtgagtttaactcagttgatatgaacaatgcataaaatat 14350988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 24623374 - 24623317
Alignment:
Q  36 gtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    ||||||||||||||||||  ||||||||||| |||||| ||||| | ||||| |||||    
T  24623374 gtttagctcagttgatatggacaatgcataatatatgtaaggttcggggttcaaaccc 24623317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 21041339 - 21041405
Alignment:
Q  27 ttctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    |||||||| ||||| |||||||| |||  |||||||||||||||||  | |||||||||||||||||    
T  21041339 ttctcgtgagtttacctcagttggtatggacaatgcataaaatatgaaatgtttgaggttcgaaccc 21041405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 2613719 - 2613783
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    |||||| | |||||||||||| |||  |||||||||||||||||| ||||| | |||||||||||    
T  2613719 ctcgtgagcttagctcagttggtatggacaatgcataaaatatgtaaggttcggggttcgaaccc 2613783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 29234038 - 29233974
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    |||||| |||||||||||||| |||  |||||||||||||||||  |||| || |||||||||||    
T  29234038 ctcgtgagtttagctcagttggtatagacaatgcataaaatatgcaaggtctggggttcgaaccc 29233974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 31426784 - 31426832
Alignment:
Q  55 aacaatgcataaaatatgttaggtttgaggttcgaa-cccggccaccac 102  Q
    ||||||||||||||||| | |||||||||||||||| ||||||||||||    
T  31426784 aacaatgcataaaatatataaggtttgaggttcgaatcccggccaccac 31426832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 45701326 - 45701374
Alignment:
Q  30 tcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggt 78  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||| ||||    
T  45701326 tcgtgagtttagctcagttggtatgaacaatgcataaaatatgtaaggt 45701374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 17917195 - 17917152
Alignment:
Q  36 gtttagctcagttgatattaacaatgcataaaatatgttaggtt 79  Q
    ||||||||||||||||||  |||||||||||||||||| |||||    
T  17917195 gtttagctcagttgatatggacaatgcataaaatatgtaaggtt 17917152  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 29251778 - 29251824
Alignment:
Q  56 acaatgcataaaatatgttaggtttgaggttcgaacccggccaccac 102  Q
    ||||||||||| |||||  |||| |||||||||||||||||||||||    
T  29251778 acaatgcataatatatgcaaggtctgaggttcgaacccggccaccac 29251824  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 50372416 - 50372362
Alignment:
Q  38 ttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacc 92  Q
    |||||||||||||||| |||||||||||| |||| | |||| |||||||| ||||    
T  50372416 ttagctcagttgatataaacaatgcataatatatatcaggtctgaggttcaaacc 50372362  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 14520950 - 14521015
Alignment:
Q  38 ttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaa-cccggccaccac 102  Q
    |||||||||||| |||  |||||||||||||||||  | ||||| |||||||| ||||||||||||    
T  14520950 ttagctcagttggtatggacaatgcataaaatatgcaaagtttggggttcgaaccccggccaccac 14521015  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 26834517 - 26834566
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggt 78  Q
    |||||| | |||||||||||||||| ||| ||||||||||||||| ||||    
T  26834517 ctcgtgagcttagctcagttgatatgaacgatgcataaaatatgtcaggt 26834566  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 3393625 - 3393589
Alignment:
Q  36 gtttagctcagttgatattaacaatgcataaaatatg 72  Q
    |||||||||||||||||| |||||||||||| |||||    
T  3393625 gtttagctcagttgatatgaacaatgcataatatatg 3393589  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 3693860 - 3693796
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaaccc 93  Q
    |||||| | ||||||||||||||||  |||| |||||| |||||| |||| |||||||| |||||    
T  3693860 ctcgtgagcttagctcagttgatatagacaaagcataatatatgtaaggtctgaggttcaaaccc 3693796  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 4715596 - 4715548
Alignment:
Q  55 aacaatgcataaaatatgttaggtttgaggttcgaacc-cggccaccac 102  Q
    ||||||||||||||||||  ||||||| |||||||||| ||||||||||    
T  4715596 aacaatgcataaaatatgcaaggtttggggttcgaacctcggccaccac 4715548  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 4770679 - 4770619
Alignment:
Q  42 ctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacccggccaccac 102  Q
    |||||||||||| |||||||||| | |||| | |||| ||||||||||| ||| |||||||    
T  4770679 ctcagttgatatgaacaatgcatgatatatataaggtctgaggttcgaatccgaccaccac 4770619  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 20711268 - 20711212
Alignment:
Q  30 tcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggtt 86  Q
    ||||| ||||| |||||||| ||  |||| |||||||||||||| ||||||||||||    
T  20711268 tcgtgagtttaactcagttgctaggaacagtgcataaaatatgtaaggtttgaggtt 20711212  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 43840389 - 43840345
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgt 73  Q
    |||||| ||||| ||||||||||||  ||||||||||||||||||    
T  43840389 ctcgtgagtttaactcagttgatatggacaatgcataaaatatgt 43840345  T

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Target: scaffold0012 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 118816 - 118888
Alignment:
Q  29 ctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttcgaacccggccacca 101  Q
    |||||| | |||||||||||| | | ||||||||||||||||||| |||| ||  |||| |||||||||||||    
T  118816 ctcgtgagcttagctcagttggtttgaacaatgcataaaatatgtaaggtctggagttcaaacccggccacca 118888  T

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Target: scaffold0053 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 14193 - 14255
Alignment:
Q  25 tattctcgtgggtttagctcagttgatattaacaatgcataaaatatgttaggtttgaggttc 87  Q
    |||||||||||  |||  |||||||||| ||||||| ||||| |||||| |||||||||||||    
T  14193 tattctcgtggccttaattcagttgatagtaacaatacataatatatgtaaggtttgaggttc 14255  T

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