View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15587_low_18 (Length: 315)
Name: NF15587_low_18
Description: NF15587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15587_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 31015893 - 31015714
Alignment:
| Q |
1 |
ttttgtgtctttatcaaa-cttatatatgaaagtacaacgcacaataatgtgaaatttgttgccctggaaaatgtgacaaacacttaaagggttcaatcc |
99 |
Q |
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| T |
31015893 |
ttttgtgtctttatcaaaacttatatatgaaagtacaacgcacaataatgtgaaatttgttgccctggaaaatgtgacaaacacttaaagggttcaatcc |
31015794 |
T |
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| Q |
100 |
aaaaatcaatacatgttgtcctataatatatatcactaacattcacctaaaaattaatacatatatggttcaatccatgg |
179 |
Q |
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| T |
31015793 |
aaaaatcaatacatgttgtcctataatatatatcactaacattcacctaaaaattaatacatatatggttcaatccatgg |
31015714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 28311580 - 28311540
Alignment:
| Q |
274 |
aggagtttcagaacaattgtatatggtttatgagatatttt |
314 |
Q |
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| T |
28311580 |
aggagttttagaacaattgtatatggtttaagtgatatttt |
28311540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 10828581 - 10828509
Alignment:
| Q |
231 |
gcatatttttcagtcattttaattatggtttaattaagattataggagtttcagaacaattgtatatggttta |
303 |
Q |
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| T |
10828581 |
gcatatttttcagtcattttacttaagtttttattcaaattattggagttttagaacaattgcatatggttta |
10828509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 1298745 - 1298662
Alignment:
| Q |
231 |
gcatatttttcagtcattttaattatggtttaattaagattataggagtttcagaacaattgtatatggtttatgagatatttt |
314 |
Q |
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| T |
1298745 |
gcatatttttcagttattttagttatgatttgaccaaaattagaggagttttagaacaattgtctatgatttcagagatatttt |
1298662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 19083898 - 19083988
Alignment:
| Q |
224 |
attttatgcatatttttcagtcattttaattatggtttaattaagattataggagtttcagaacaattgtatatggtttatgagatatttt |
314 |
Q |
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||||| |||| ||||||||||||||||| |||| || |||| | |||| | |||||| ||||||||| ||||||||||| |||||||| |
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| T |
19083898 |
attttgtgcaaatttttcagtcattttagttatcgtctaatccaaattagacgagttttagaacaatttcctatggtttatgggatatttt |
19083988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 8322968 - 8323013
Alignment:
| Q |
269 |
attataggagtttcagaacaattgtatatggtttatgagatatttt |
314 |
Q |
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|||| ||||||| ||||||||||| |||||||||||||||||||| |
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| T |
8322968 |
attagaggagttctagaacaattgtctatggtttatgagatatttt |
8323013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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