View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15587_low_19 (Length: 306)

Name: NF15587_low_19
Description: NF15587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15587_low_19
NF15587_low_19
[»] chr1 (1 HSPs)
chr1 (1-292)||(39099442-39099732)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 39099442 - 39099732
Alignment:
Q  1 ctaatactcatagaagaatccttctctagggtcctcctctcacttttgggagtctgcagatctaactttccaacttcttcaaccaattatttattaagat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  39099442 ctaatactcatagaagaatccttctctagggtcctcctctcacttttgggagcctgcagatctaactttccaacttcttcaaccaattatt-attaagat 39099540  T
Q  101 tttatatagaatttattctgctgcagatctaacttagtgccaactttttgttgaaatatatttgtaaattaatgtgctttatgaaaactgaatttcaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39099541 tttatatagaatttattctgctgcagatctaacttagtgccaactttttgatgaaatatatttgtaaattaatgtgctttatgaaaactgaatttcaaat 39099640  T
Q  201 atgcataattattattcactcatctatagtttggcaacttattcttgtaagttgtaagcaaacggctagtactattattcttcttagtatta 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39099641 atgcataattattattcactcatctatagtttggcaacttattcttgtaagttgtaagcaaacggctagtactattattcttcttagtatta 39099732  T

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