View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15587_low_6 (Length: 561)
Name: NF15587_low_6
Description: NF15587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15587_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 13 - 546
Target Start/End: Original strand, 26541828 - 26542364
Alignment:
| Q |
13 |
aatatatatgattttcattgtgaccttaaagtttaaaacatcttcctaaaaaatccttatcctacaaaatattaatttcaatttaggcatttaaaattat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26541828 |
aatatatatgattttcattgtgaccttaaagtttaaaacatcttcctaaaaaatccttatcctacaaaatattaatttcaatttaggcatttaaaattat |
26541927 |
T |
|
| Q |
113 |
tctcagtagttttgcatattatcaactattaagtaagcaatcaatatcacctctgcagtacaactattttgggaagtttacaagactcaccacaacttct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26541928 |
tctcagtagttttgcatattatcaactattaagtaagcaatcaatatcacctctgcagtacaactattttgggaagtttacaagactcaccacaacttct |
26542027 |
T |
|
| Q |
213 |
ttgtccatcgctattccttcctagaaaaacccatgtgccacagnnnnnnngataaggttatgattagtctttttataaagagtgacatcccacgtacctt |
312 |
Q |
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| T |
26542028 |
ttgtccatcgctattccttcctagaaaaacccatgtgccacagaaaaaa-gataaggttatgattagtctttttataaagagtgacatcccacgtacctt |
26542126 |
T |
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| Q |
313 |
acaatacatttttgtaaggttgagttatgagtgttaaaggggaatttgattgtgactcgccaatttattcgaaaaactttcttccgattggccaaaaatg |
412 |
Q |
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| T |
26542127 |
acaatacatttttgtaaggttgagttatgagtgttaaaggggaatttgattgtgactcgccaatttattcgaaaaactttcttccgattggccaaaaatg |
26542226 |
T |
|
| Q |
413 |
taattagttaatttttctttcccaagtttaaaggtccca----agttataagtacaactattagaatttaggattttattacaagttgaatattatgaag |
508 |
Q |
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| T |
26542227 |
taattagttaatttttctttcccaagtttaaaggtcccaagagagttataagtacaattattagaatttaggattttattacaagttgaatattatgaag |
26542326 |
T |
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| Q |
509 |
tcgttgcaatgcaaataggcgtttcccatattatattt |
546 |
Q |
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| T |
26542327 |
tcgttgcaatgcaaataggcgtttcccatattatattt |
26542364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 26548562 - 26548885
Alignment:
| Q |
13 |
aatatatatgattttcattgtgaccttaaagtttaaaacatcttcctaaaaaatccttatcctacaaaatattaatttcaatttaggcatttaaaattat |
112 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
26548562 |
aatatatatgattttcattgtgacattaaagtttaaaacatctttctataaaatccttatcctacaaaatattaattccaatataggcatttaaaattat |
26548661 |
T |
|
| Q |
113 |
tctcagtagttttgcatattatcaactattaagtaagcaatcaatatcacctctgcagtacaactattttgggaagtttacaagactcaccacaacttct |
212 |
Q |
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|| |||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
26548662 |
tcgcagtagttttacatattatcaactattaagtaagcagtcaatatcacttctgcagtataactattttgggaagtttacgagactcaccacaacttct |
26548761 |
T |
|
| Q |
213 |
ttgtccatcgctattccttcctagaaaaacccatgtgccacagnnnnnnngataaggttatgattagtctttttataaagagtgacatcccacgtacctt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| || | |||||| |
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| T |
26548762 |
ttgtccatcgctattccttcctagaaaaacccatgtgccacag-aaaaaagataaggttatgaatagtc--tttataaagagtgacattccgcatacctt |
26548858 |
T |
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| Q |
313 |
acaatacatttttgtaaggttgagtta |
339 |
Q |
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| T |
26548859 |
acaatccatttttgtaaggttgagtta |
26548885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 26549801 - 26549865
Alignment:
| Q |
99 |
gcatttaaaattattctcagtagttttgcatattatcaa-ctattaagtaagcaatcaatatcac |
162 |
Q |
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| T |
26549801 |
gcatttaaacttattctcagtagttatgcatattatcaatttattaagcaagctatcaatatcac |
26549865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 26549737 - 26549781
Alignment:
| Q |
16 |
atatatgattttcattgtgaccttaaagtttaaaacatcttccta |
60 |
Q |
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| T |
26549737 |
atatatgattttcattgcgacatttaagtttaaaacctcttccta |
26549781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 533
Target Start/End: Original strand, 6432886 - 6432967
Alignment:
| Q |
453 |
gttataagtacaactattagaatttaggattttatta-caagttgaatattatgaagtcgttgcaatgcaaataggcgtttc |
533 |
Q |
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|||||||||| || ||||||||||||||||||||||| ||||||||| |||||||||| || |||||||| ||||| |||| |
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| T |
6432886 |
gttataagtataattattagaatttaggattttattatgaagttgaatgttatgaagtcattacaatgcaagtaggcatttc |
6432967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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