View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15587_low_8 (Length: 463)

Name: NF15587_low_8
Description: NF15587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15587_low_8
NF15587_low_8
[»] chr1 (3 HSPs)
chr1 (19-360)||(16954776-16955117)
chr1 (19-334)||(16965381-16965696)
chr1 (367-456)||(16954613-16954702)


Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 16955117 - 16954776
Alignment:
Q  19 aaactgtcccagaattctattgaagttgtaggtggttgttgtcctcttctgaaatcacttgaatgtcagctcactttcgataaggaagagatatctgagg 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |    
T  16955117 aaactgtcccagaattctattgaagctgtaggtggttgttgtcctcttctgaaatcactggaatgtcatctcactttcgataaggaagaaatatctgatg 16955018  T
Q  119 acgattttttggctatcgctaaaacaatgcctcgattatgtcatcttaaaatttctcgaaataagctctcatctgatgggattctaattgccattcttaa 218  Q
    |||| ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16955017 acgagtttttggctgtcgctaaaacaatgcctcgactacgtcatcttaaaatttctcgaaataagctctcatctgatgggattctaattgccattctaaa 16954918  T
Q  219 tggatgtcttcttcttgaatctcttgacctgggattatgttttagtttggatttgagtgaaagtttgaggaaaaggtgctatgatcaaatcaaagattgt 318  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16954917 tggatgtcctcttcttgaatcgcttgacctaggattatgttttagtttggatttgagtgaaagtttgaggaaaaggtgttatgatcaaatcaaagattgt 16954818  T
Q  319 aaacttccaatagattttcataaatttttacaaatgttcgaa 360  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16954817 aaacttccaatagattttcataaatttttacaaatgttcgaa 16954776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 16965696 - 16965381
Alignment:
Q  19 aaactgtcccagaattctattgaagttgtaggtggttgttgtcctcttctgaaatcacttgaatgtcagctcactttcgataaggaa---gagatatctg 115  Q
    |||||||||| |||||| ||||||||||||||||| | |||||||||||| ||||||||   ||||  |||||||| ||||| | ||   |  | ||| |    
T  16965696 aaactgtcccggaattccattgaagttgtaggtggatcttgtcctcttctaaaatcactgacatgtatgctcacttccgatatgaaaactggaaaatccg 16965597  T
Q  116 aggacgattttttggctatcgctaaaacaatgcctcgattatgtcatcttaaaatttctcgaaataagctctcatctgatgggattctaattgccattct 215  Q
    | || ||  | || |||||||||||| |||||||||||||| |||||||||||||| || ||||||| ||||||||||||||| ||||   |||||||||    
T  16965596 atgatgagctgttcgctatcgctaaatcaatgcctcgattacgtcatcttaaaattgctggaaataatctctcatctgatggggttct---tgccattct 16965500  T
Q  216 taatggatgtcttcttcttgaatctcttgacctgggattatgttttagtttggatttgagtgaaagtttgaggaaaaggtgctatgatcaaatcaaagat 315  Q
    ||||| ||||  |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  16965499 taatgaatgttctcttcttgaatctcttgacctgggattatgttttaggttggattggagtgaaagattgaggaaaaggtgctatgatcaaatcaaagat 16965400  T
Q  316 tgtaaacttccaatagatt 334  Q
    | |||||||||| ||||||    
T  16965399 tttaaacttccagtagatt 16965381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 367 - 456
Target Start/End: Complemental strand, 16954702 - 16954613
Alignment:
Q  367 ctattgttgtgatatttacttattcctgtcgtagaggtttgtttaagtgacggtattgaaatttgtggccagttatcgatggttcatctc 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16954702 ctattgttgtgatatttacttattcctgtcgtagaggtttgtttaagtgacggtattgaaatttgtggccagttatcgatggttcatctc 16954613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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