View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15587_low_9 (Length: 431)

Name: NF15587_low_9
Description: NF15587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15587_low_9
NF15587_low_9
[»] chr4 (6 HSPs)
chr4 (1-431)||(6171018-6171446)
chr4 (74-127)||(22048829-22048882)
chr4 (314-384)||(4880189-4880259)
chr4 (80-136)||(7277420-7277476)
chr4 (35-146)||(20291776-20291886)
chr4 (36-120)||(31372906-31372990)
[»] chr8 (2 HSPs)
chr8 (78-127)||(27988158-27988207)
chr8 (78-127)||(28045460-28045509)
[»] chr6 (3 HSPs)
chr6 (75-127)||(9605380-9605431)
chr6 (65-110)||(7257400-7257445)
chr6 (31-100)||(8380992-8381061)
[»] chr1 (2 HSPs)
chr1 (40-127)||(5700075-5700161)
chr1 (49-111)||(35790356-35790418)
[»] chr5 (2 HSPs)
chr5 (41-127)||(7065627-7065712)
chr5 (78-127)||(14509833-14509882)
[»] chr7 (1 HSPs)
chr7 (92-132)||(34750421-34750461)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 6171018 - 6171446
Alignment:
Q  1 ccaactgagctaagctcacagggaccaatctttcagatttattgaaaaaataatgtatcagacatatattatggatcaaatacattaattgttcaatgaa 100  Q
    |||| |||| ||||||| | || |||||||||||| |||||||||||||||||| |||||||||| ||||||| |||| ||| ||||||| |||||||||    
T  6171018 ccaattgagttaagctcgcgggaaccaatctttcaaatttattgaaaaaataatttatcagacatgtattatgaatcagatatattaattattcaatgaa 6171117  T
Q  101 attaaaaagttgttattttgcttataatagtgtctgaaatgagtatctctcataatcaaacattaggaaatttcatccaaggattcaaaaaccacacgat 200  Q
    | |||||| || || ||||  |||||||| || ||| | ||| ||| ||  || || |||||| || ||||||||||||| ||||||||  |||||||||    
T  6171118 actaaaaaattatt-ttttatttataataatgactggagtgattatatcaaatgataaaacatcagaaaatttcatccaaagattcaaa--ccacacgat 6171214  T
Q  201 tgtaggatctctatatataatgaactagcttacataacaaaactcaaaaccatcttcctccaaagctctaaaaagcacacatcttcnnnnnnnttctata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||| |    
T  6171215 tgtaggatctctatatataatgaactagcttacataacaaaactcaaaaccatcttcctccaaagctctaaaaagcacacatcttcaaaaaaattctaaa 6171314  T
Q  301 ctcc-nnnnnnnntggctaagcttattttcttgtgctttttattagcaaatactattctatctcatgccattgctacaattacaaccaaacctcaaatta 399  Q
    ||||         |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||| ||||||||||||||    
T  6171315 ctccaaaaaaaaatggctaagcttattttcttgtgctttttattagcaaatactattctatgtcatgtcatggctacaactacaaacaaacctcaaatta 6171414  T
Q  400 gtgtccaatctatttcatcaccatcttcaaat 431  Q
    ||||||||||||||||||||||||||||||||    
T  6171415 gtgtccaatctatttcatcaccatcttcaaat 6171446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 22048882 - 22048829
Alignment:
Q  74 gatcaaatacattaattgttcaatgaaattaaaaagttgttattttgcttataa 127  Q
    ||||||||||||||||| |||||||||  |||||| ||||| ||||||||||||    
T  22048882 gatcaaatacattaattattcaatgaacataaaaatttgttcttttgcttataa 22048829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 4880189 - 4880259
Alignment:
Q  314 ggctaagcttattttcttgtgctttttattagcaaatactattctatctcatgccattgctacaattacaa 384  Q
    ||||||| | |||||||||||||||| ||||||||||||  | |||| ||||| ||| ||||||| |||||    
T  4880189 ggctaagttaattttcttgtgcttttcattagcaaatacactactatgtcatgtcatggctacaactacaa 4880259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 7277476 - 7277420
Alignment:
Q  80 atacattaattgttcaatgaaattaaaaagttgttattttgcttataatagtgtctg 136  Q
    |||||||| || |||||||||  |||||||||||| ||||||||||||  |||||||    
T  7277476 atacattagttattcaatgaacctaaaaagttgtttttttgcttataaatgtgtctg 7277420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 20291886 - 20291776
Alignment:
Q  35 agatttattgaaaaaataatgtatc-agacatatattatggatcaaatacattaattgttcaatgaaattaaaaagttgttattttgcttataatagtgt 133  Q
    |||||||||||| || ||||||||| || | || ||||| ||||| |||||||| || || |||  | ||||||||||||| ||||||||||||  |||     
T  20291886 agatttattgaataactaatgtatccagtcgta-attatagatcagatacattagttatttaatatacttaaaaagttgtt-ttttgcttataaatgtga 20291789  T
Q  134 ctgaaatgagtat 146  Q
    |||||||||||||    
T  20291788 ctgaaatgagtat 20291776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 31372906 - 31372990
Alignment:
Q  36 gatttattgaaaaaataatgtatcagacatatattatggatcaaatacattaattgttcaatgaaattaaaaagttgttattttg 120  Q
    ||||||||||| |||| ||||||| ||  |||||||| ||||||||| || | || ||||||  | ||||||||||||| |||||    
T  31372906 gatttattgaataaatgatgtatctgaactatattatagatcaaatatatcatttattcaatttatttaaaaagttgtttttttg 31372990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 27988158 - 27988207
Alignment:
Q  78 aaatacattaattgttcaatgaaattaaaaagttgttattttgcttataa 127  Q
    ||||||||||||| |||||||||  |||||||||||| ||||||||||||    
T  27988158 aaatacattaattattcaatgaatctaaaaagttgttgttttgcttataa 27988207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 28045460 - 28045509
Alignment:
Q  78 aaatacattaattgttcaatgaaattaaaaagttgttattttgcttataa 127  Q
    ||||||||||||| |||||||||  |||||||||||| ||||||||||||    
T  28045460 aaatacattaattattcaatgaatctaaaaagttgttgttttgcttataa 28045509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 9605431 - 9605380
Alignment:
Q  75 atcaaatacattaattgttcaatgaaattaaaaagttgttattttgcttataa 127  Q
    |||||||||||||| | |||||| |||||||||||||||| ||||||||||||    
T  9605431 atcaaatacattaagtattcaattaaattaaaaagttgtt-ttttgcttataa 9605380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 7257400 - 7257445
Alignment:
Q  65 tatattatggatcaaatacattaattgttcaatgaaattaaaaagt 110  Q
    ||||||||  |||||||||||||||| ||||||||| |||||||||    
T  7257400 tatattatatatcaaatacattaattattcaatgaatttaaaaagt 7257445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 8380992 - 8381061
Alignment:
Q  31 tttcagatttattgaaaaaataatgtatcagacatatattatggatcaaatacattaattgttcaatgaa 100  Q
    |||||||||||||||| || ||||||||  || |||||||||  |||| |||||| |||| |||||||||    
T  8380992 tttcagatttattgaataattaatgtatttgaaatatattataaatcagatacatcaattattcaatgaa 8381061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 5700075 - 5700161
Alignment:
Q  40 tattgaaaaaataatgtatcaga-catatattatggatcaaatacattaattgttcaatgaaattaaaaagttgttattttgcttataa 127  Q
    ||||||| || ||||||||| || ||||| |||| |||||||| |||||||| ||||||| | ||||||||||||| ||||||||||||    
T  5700075 tattgaataattaatgtatccgatcatat-ttatagatcaaatgcattaattattcaatgtacttaaaaagttgtt-ttttgcttataa 5700161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 35790418 - 35790356
Alignment:
Q  49 aataatgtatcagacatatattatggatcaaatacattaattgttcaatgaaattaaaaagtt 111  Q
    ||||||||||| ||| ||||| ||  ||||||||||| |||| ||||||||| ||||||||||    
T  35790418 aataatgtatctgacttatatcatatatcaaatacatcaattattcaatgaatttaaaaagtt 35790356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 7065627 - 7065712
Alignment:
Q  41 attgaaaaaataatgtatcagacatatattatg-gatcaaatacattaattgttcaatgaaattaaaaagttgttattttgcttataa 127  Q
    |||||| || ||||| ||||||||||||  ||| ||||| ||||||||||| ||||||||| ||||||||||| | ||||||||||||    
T  7065627 attgaataactaatgcatcagacatataa-atgtgatcagatacattaattattcaatgaatttaaaaagttgat-ttttgcttataa 7065712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 14509882 - 14509833
Alignment:
Q  78 aaatacattaattgttcaatgaaattaaaaagttgttattttgcttataa 127  Q
    ||||||||||||| || |||| | ||||||||||||| ||||||||||||    
T  14509882 aaatacattaattattgaatgtacttaaaaagttgtttttttgcttataa 14509833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 34750421 - 34750461
Alignment:
Q  92 ttcaatgaaattaaaaagttgttattttgcttataatagtg 132  Q
    ||||||||| ||||||||| ||| |||||||||||||||||    
T  34750421 ttcaatgaacttaaaaagtagtttttttgcttataatagtg 34750461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University