View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15588_high_1 (Length: 570)
Name: NF15588_high_1
Description: NF15588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15588_high_1 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Original strand, 1328882 - 1329451
Alignment:
| Q |
1 |
gaaagggacaaaggtagagaaatcgttgtaagatccacaccagtgcgtgaaatgaagttagagcaaattttttccaaaatgcagcatttgcaattgcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1328882 |
gaaagggacaaaggtagagaaatcgttgtaagatccacaccagtgcgtgaaatgaagttagagcaaattttttccaaaatgcagcatttgcaattgcttc |
1328981 |
T |
|
| Q |
101 |
ttgaacgctttttagcttgtcgccccacaggtttgtgatcattagaccatacattttgcataacaaaatacttatccttccattcaatttgctttatata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1328982 |
ttgaacgctttttagcttgtcgccccacaggtttgtgatcattagaccatacattttgcataacaaaatacttatccttccattcaatttgctttatata |
1329081 |
T |
|
| Q |
201 |
ttattagattttatctagttttttcttatcaaacacctttttgcaatcaaatatatctaagtatgcataccatatgatatattcacattacattacacat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1329082 |
ttattagattttatctagttttttcttatcaaacacctttttgcaatcaaatatatctaagtatgcataccatatgatatattcacattacattacacat |
1329181 |
T |
|
| Q |
301 |
gtatacaaagcattctcatggctatctgtttcaatgcaacagggacagcaaagaaccatagaattgtgatagtggctctttatccaattgtgaaggagag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1329182 |
gtatacaaagcattctcatggctatctgtttcaatgcaacaggaacagcaaagagccatagaattgtgatagtggctctttatccaattgtgaaggagag |
1329281 |
T |
|
| Q |
401 |
ttttcaatcatattacgacatatcagaaatattgagcatcttaatcgaccgttttcctgacatggatgtcgcagactgtatcaaggtgtatgacattttc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1329282 |
ttttcaatcatattacgacatatcagaaatattgagcatcttaatcgaccgtttttctgacatggatgtcgcagactgtatcaaggtgtatgacattttc |
1329381 |
T |
|
| Q |
501 |
tgtcgtattggaaaacagtttgatgagctagacctcttctatggatggtccaagaatattggaatttgtc |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1329382 |
tgtcgtattggaaaacagtttgatgagctagacctcttctatggatggtccaagaatattggaatttgtc |
1329451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 1924822 - 1924897
Alignment:
| Q |
338 |
aacagggacagcaaagaaccatagaattgtgatagtggctctttatccaattgtgaaggagagttttcaatcatat |
413 |
Q |
| |
|
|||||| | |||||||| |||||||| ||||||||||| || || |||||||||||||||||||||||| ||||| |
|
|
| T |
1924822 |
aacaggtagagcaaagacacatagaatggtgatagtggcactctacccaattgtgaaggagagttttcaaacatat |
1924897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University