View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15588_high_5 (Length: 316)
Name: NF15588_high_5
Description: NF15588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15588_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 49656361 - 49656677
Alignment:
| Q |
1 |
ccaacaggttgtgttagaagtattaatctaaagttaaaagatgaagatagttgatttagcttttcttatgcgtaccnnnnnnnt-ctgaatagtgacta- |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
49656361 |
ccaacaggttgtgttagaagtattaatctaaagttaaaagatgaagatagttgatttagcttttctgatgcgtaccaaaaaaaagctgaatagtgactaa |
49656460 |
T |
|
| Q |
99 |
------tagatacaaaattttaaaatcacacttgcccaaaaaaggaacttagtatcacagttctgttattacagtgaagattagattggataactatgga |
192 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49656461 |
tgactatatatacaaaattttaaaatcacaattgcccaaaaaaggaacttagtatcacagttctgttattacagtgaagattagattggataactatgga |
49656560 |
T |
|
| Q |
193 |
ctactatatgatttgacgcgatagagatctcgcgttatcataggtttaagagaagggtcagagtcagaggcattaaaagtcttatttgaatgagactcat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49656561 |
ctactatatgatttgacgcgatagagatctcgcgttatcataggtttaagagaagggtcagagtcagaggcattaaaagtcttatttgaatgagactcat |
49656660 |
T |
|
| Q |
293 |
ttcattcattcatctca |
309 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
49656661 |
ttcattcattcatctca |
49656677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University