View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15588_high_7 (Length: 250)
Name: NF15588_high_7
Description: NF15588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15588_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 29021554 - 29021316
Alignment:
| Q |
2 |
tgtcatttcttgtcctagaataaccattgcctgcattgcttctgcttaccgcaagagaccaacagtgacggtatcatattccattacctccgaaccagac |
101 |
Q |
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| T |
29021554 |
tgtcattttttgtcctagaataaccattgcctgcattgcttctgcttaccgcaagagaccaatagtgacggtatcatattccattacctccgaaccagac |
29021455 |
T |
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| Q |
102 |
gactatgcaattgcaatgtaagttacttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgttatatgtatgcctgcttg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29021454 |
gactatgcaattgcaatgtaagttacttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgttatatgtatgcctgcttg |
29021355 |
T |
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| Q |
202 |
ttttttccttaacttactgtttaattaattttgcctttg |
240 |
Q |
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| T |
29021354 |
ttttttccttaacttactgtttaattaattttgcctttg |
29021316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 28673577 - 28673751
Alignment:
| Q |
7 |
tttcttgtcctagaataaccattgcctgcattgcttctgcttaccgcaagagaccaacagtgacggtatcatattccattacctccgaaccagacgacta |
106 |
Q |
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| T |
28673577 |
tttcttgtcatagattaaccatctcctgcattgcttctgcttgccgcaagagaccaacattgacggtatcaatttccattacttccgaaccagaggacta |
28673676 |
T |
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| Q |
107 |
tgcaattgcaatgtaagttacttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgttata |
187 |
Q |
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| T |
28673677 |
------tgcaatgtaagttacttaacatttcattgatccgttggtgagtttaaagggtttaacttgtcttgatttgttata |
28673751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 28695827 - 28695933
Alignment:
| Q |
7 |
tttcttgtcctagaataaccattgcctgcattgcttctgcttaccgcaagagaccaacagtgacggtatcatattccattacctccgaaccagacgacta |
106 |
Q |
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||||||||| |||| ||||||| |||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||| |||||| ||||| |||| |
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| T |
28695827 |
tttcttgtcatagattaaccatctcctgcattgcttctgcttgccgcaagagaccaacattgacggtgtcaatttccattacttccgaa-cagacaacta |
28695925 |
T |
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| Q |
107 |
tgcaattg |
114 |
Q |
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|||||||| |
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| T |
28695926 |
tgcaattg |
28695933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 28532449 - 28532392
Alignment:
| Q |
126 |
acttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt |
183 |
Q |
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| T |
28532449 |
acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgt |
28532392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 3438016 - 3438071
Alignment:
| Q |
128 |
ttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt |
183 |
Q |
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|||||| ||||||||||||||||||||| | ||||| ||||||||||||||||||| |
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| T |
3438016 |
ttcacacttcattgacttgttggtgagtctgaagggattaacttgtcttgatttgt |
3438071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 10615326 - 10615269
Alignment:
| Q |
125 |
tacttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttg |
182 |
Q |
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| T |
10615326 |
tacttcacattttattgactcattggtgagtttgaagggcttgacttgtcttgatttg |
10615269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 6588694 - 6588750
Alignment:
| Q |
127 |
cttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt |
183 |
Q |
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|||||||||| ||||||| ||||||||||| ||| |||| |||||||||| ||||| |
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| T |
6588694 |
cttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgt |
6588750 |
T |
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