View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15588_low_1 (Length: 793)

Name: NF15588_low_1
Description: NF15588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15588_low_1
NF15588_low_1
[»] chr6 (5 HSPs)
chr6 (64-271)||(8094987-8095193)
chr6 (663-790)||(8096153-8096280)
chr6 (1-239)||(8100216-8100443)
chr6 (606-689)||(7308743-7308826)
chr6 (64-141)||(8105991-8106068)
[»] chr7 (1 HSPs)
chr7 (571-645)||(7392849-7392922)
[»] chr3 (2 HSPs)
chr3 (606-645)||(31005193-31005232)
chr3 (576-686)||(21334808-21334917)
[»] chr4 (1 HSPs)
chr4 (613-674)||(36681691-36681752)
[»] chr2 (1 HSPs)
chr2 (592-645)||(12776985-12777037)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 8e-91; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 64 - 271
Target Start/End: Original strand, 8094987 - 8095193
Alignment:
Q  64 ggccttaaaagaaagaggaaatacttctattgattaatttagaacaattccttttagaaaataacattttagaaaaaacttaggattcttttaagataaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  8094987 ggccttaaaagaaagaggaaatacttctattgattaatttagaacaattccttttagaaaataacattctagtaaaaacttaggattcttttaagataaa 8095086  T
Q  164 acactgcatgataaatattattgatcactttataacacatatcaaagaaaaattaaaccatgaaagaaagaagcagcagatgaactcagagat-aaaaaa 262  Q
    ||| ||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  8095087 acattgcatgataaatattattgatcactt--taacacatatcagagaaaaattaaaccatgaaagaaagaagcagcagatgaactgagagataaaaaaa 8095184  T
Q  263 tcagttatt 271  Q
    |||||||||    
T  8095185 tcagttatt 8095193  T

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Target: chr6; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 663 - 790
Target Start/End: Original strand, 8096153 - 8096280
Alignment:
Q  663 gtaaagttattattttgattagtggaatgaattaagagttgctatttcatccagagtaagtcaatttaaacaacattttgtgtttttcttcctttttctt 762  Q
    ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8096153 gtaaagttactcttttgattagtggaatgaattaagagttgctttttcatccagagtaagtcaatttaaacaacattttgtgtttttcttcctttttctt 8096252  T
Q  763 ccttcatattgatgtttatattggtcga 790  Q
    ||||||||||||||||||| ||| ||||    
T  8096253 ccttcatattgatgtttattttgttcga 8096280  T

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Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8100216 - 8100443
Alignment:
Q  1 gagcagtaaaagcaaaatacagattcaccgtgttatgaatcctggattcctggccnnnnnnnnggccttaaaagaaagaggaaatacttctattgattaa 100  Q
    ||||||||| ||||||||||| ||||| ||||| ||||||||||||||  |||||        ||||||| |||||||||||||||||||||||||        
T  8100216 gagcagtaagagcaaaatacaaattcatcgtgtgatgaatcctggatta-tggcctagaaaatggccttagaagaaagaggaaatacttctattgag--- 8100311  T
Q  101 tttagaacaattccttttagaaaataacattttagaaaaaactt-aggattcttttaagataaaacactgcatgataaatattattgatcactttataac 199  Q
           |||||||||| ||||||| | ||| |||||||||  | |||||||||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  8100312 -------caattcctttcagaaaatcatattctagaaaaaaaatcaggattcttttaagataaaaca-tgcacgataaatattattgatcactttgtaac 8100403  T
Q  200 acatatcaaagaaaaattaaaccatgaaagaaagaagcag 239  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  8100404 acatatcagagaaaaattaaactatgaaagaaagaagcag 8100443  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 606 - 689
Target Start/End: Original strand, 7308743 - 7308826
Alignment:
Q  606 aaaatggtagaattaggtttgaagattgattattgtaattgctatcaaaatctttatgtaaagttattattttgattagtggaa 689  Q
    |||||| ||||||||||||||||||||| || |||||||| || | | ||||| | |||||||||| | |||||||||||||||    
T  7308743 aaaatgctagaattaggtttgaagattggttcttgtaattccttttagaatctctttgtaaagttactcttttgattagtggaa 7308826  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 8105991 - 8106068
Alignment:
Q  64 ggccttaaaagaaagaggaaatacttctattgattaatttagaacaattccttttagaaaataacattttagaaaaaa 141  Q
    |||| ||||| ||||||||| |||||||||||   ||||||| ||||||||||| ||||||| ||| | |||||||||    
T  8105991 ggccctaaaataaagaggaactacttctattgcacaatttaggacaattcctttcagaaaattacagtctagaaaaaa 8106068  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 645
Target Start/End: Complemental strand, 7392922 - 7392849
Alignment:
Q  571 cattgagtctatttgtcacgggaagagattcggaaaaaatggtagaattaggtttgaagattgattattgtaatt 645  Q
    |||||||||| || |||| ||| |||||||  ||||||| |||||||||||||||||||| ||||| ||||||||    
T  7392922 cattgagtctcttggtcaagggtagagatttagaaaaaa-ggtagaattaggtttgaagactgattcttgtaatt 7392849  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 645
Target Start/End: Original strand, 31005193 - 31005232
Alignment:
Q  606 aaaatggtagaattaggtttgaagattgattattgtaatt 645  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  31005193 aaaatggtagaattaggtttgaagaatgatttttgtaatt 31005232  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 686
Target Start/End: Complemental strand, 21334917 - 21334808
Alignment:
Q  576 agtctatttgtcacgggaagagattcggaaaaaatggtagaattaggtttgaagattgattattgtaattgctatcaaaatctttatgtaaagttattat 675  Q
    ||||| || |||||| ||||||||| || ||||  |||||||||||||||||||| || || |||||||| || |   ||||||| |||||||||| | |    
T  21334917 agtctcttggtcacgagaagagatttgggaaaag-ggtagaattaggtttgaagactggttcttgtaattccttttggaatctttgtgtaaagttactct 21334819  T
Q  676 tttgattagtg 686  Q
     ||||||||||    
T  21334818 cttgattagtg 21334808  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 674
Target Start/End: Original strand, 36681691 - 36681752
Alignment:
Q  613 tagaattaggtttgaagattgattattgtaattgctatcaaaatctttatgtaaagttatta 674  Q
    |||||||| ||||||||||||||| |||||||| || |   ||||||| |||||||||||||    
T  36681691 tagaattatgtttgaagattgattcttgtaatttcttttggaatctttgtgtaaagttatta 36681752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 645
Target Start/End: Original strand, 12776985 - 12777037
Alignment:
Q  592 gaagagattcggaaaaaatggtagaattaggtttgaagattgattattgtaatt 645  Q
    ||||||||||| | |||| ||||||||||||||| |||||||||| ||||||||    
T  12776985 gaagagattcg-agaaaagggtagaattaggttttaagattgattcttgtaatt 12777037  T

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