View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15588_low_10 (Length: 237)
Name: NF15588_low_10
Description: NF15588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15588_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 2309146 - 2309340
Alignment:
| Q |
20 |
ggttcatcgtcctcgttactctctgcatcatcttccttattagagccatgctctccttcttcacaaccactgtacccctccctcccggccctctacacat |
119 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309146 |
ggttcatagtcctcgttactctctgcatcatcttccttatcagagccatgctctccttcttcacaaccactgtacccctccctcccggccctctacacat |
2309245 |
T |
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| Q |
120 |
ccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatca |
214 |
Q |
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| T |
2309246 |
ccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca |
2309340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 2320135 - 2320333
Alignment:
| Q |
20 |
ggttcatcgtcctcgttactctctgcatcatcttccttattagagccatgctctccttcttcacaaccactgtacccctccctcccggccctctacacat |
119 |
Q |
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||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2320135 |
ggttcatcgtcctcgttacgctatgcatcatcttccttatcagagccatcctctccttcttcacaaccaccgtacccctccctcccggccctctacacat |
2320234 |
T |
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| Q |
120 |
ccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcactgt |
218 |
Q |
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| T |
2320235 |
ccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgt |
2320333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 2292815 - 2293013
Alignment:
| Q |
20 |
ggttcatcgtcctcgttactctctgcatcatcttccttattagagccatgctctccttcttcacaaccactgtacccctccctcccggccctctacacat |
119 |
Q |
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||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
2292815 |
ggttcattgtcctcgttactctttgcatcatcttccttatcagagccatcctctccttattcacaaccaccatacccctccctcccggccctctacacat |
2292914 |
T |
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| Q |
120 |
ccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcactgt |
218 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2292915 |
ccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgt |
2293013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 2325989 - 2326183
Alignment:
| Q |
20 |
ggttcatcgtcctcgttactctctgcatcatcttccttattagagccatgctctccttcttcacaaccactgtacccctccctcccggccctctacacat |
119 |
Q |
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|||||||||||||| ||||||| |||||||||||||| | | |||||| ||||||| |||||||||||| ||||||||||||||| |||| | |||||| |
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| T |
2325989 |
ggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccaccacacat |
2326088 |
T |
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| Q |
120 |
ccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatca |
214 |
Q |
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|||||||||||||| | |||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2326089 |
ccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca |
2326183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 2302434 - 2302630
Alignment:
| Q |
20 |
ggttcatcgtcctcgttactctctgcatcatcttccttattagagccatgctctccttcttcacaaccactgtacccctccctcccggccctctacacat |
119 |
Q |
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||||||| |||||| |||||||||||||||||||||| || ||| ||| || ||| |||||||||||| |||||| ||||||| ||||||| |||||| |
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| T |
2302434 |
ggttcattgtcctcattactctctgcatcatcttcctcatcggagtcattcttgcctccttcacaaccaccgtacccttccctcctggccctccacacat |
2302533 |
T |
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| Q |
120 |
ccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcact |
216 |
Q |
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||||||| ||||||| | || ||||||| |||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2302534 |
ccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcact |
2302630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 2329808 - 2329898
Alignment:
| Q |
124 |
atcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatca |
214 |
Q |
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|||||||||| |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
2329808 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatca |
2329898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 2350079 - 2350200
Alignment:
| Q |
95 |
ccctccctcccggccctctacacatccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgc |
194 |
Q |
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||||||||||||| || | || |||||||| ||||||| ||| || ||||| ||||||| |||||||| ||||||||| ||||||| ||||| | |
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| T |
2350079 |
ccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacac |
2350178 |
T |
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| Q |
195 |
taaacatggtcctatcatcact |
216 |
Q |
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||| ||||||||||||||||| |
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| T |
2350179 |
caaatatggtcctatcatcact |
2350200 |
T |
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