View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15588_low_3 (Length: 393)
Name: NF15588_low_3
Description: NF15588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15588_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 23664727 - 23665103
Alignment:
| Q |
1 |
actagaaatgcttaacattatttggtcagaatcacattcaatctatattctacatttctacatcataaaatgtttg-gcaaacattgtcaactatggttg |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
23664727 |
actagaaatgcttaacattatttggtcagaatcacattcaatctatattctacatttctacatcataaaatgtttgtggaaacattgtcaactatggttg |
23664826 |
T |
|
| Q |
100 |
ccccctttatctaatattcttgtaatgtcagaaccataagtactcagcaagcaatgaatgataaacagttccagcttctgcatttttagatatatgataa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23664827 |
ccccctttatctaatattcttgtaatgtcagaaccataagtactcagcaagcaatgaatgataaacagttccagcttctgcatttttagatatatgataa |
23664926 |
T |
|
| Q |
200 |
tagattaccacataataactaaagaaaataatctatatcaatcatttatcaataaaccaatgattgatattacatggacatacataagaaatcactgttg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23664927 |
tagattaccacataataactaaagaaaataatctatatcaatcatttatcaataaaccaatgattgatattacatggacatacataagaaatcactgttg |
23665026 |
T |
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| Q |
300 |
tgttgaaatattagctattgannnnnnncattaatcacttcacactttagagaagtcataccctaaccacaaaagtt |
376 |
Q |
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| T |
23665027 |
tgttgaaatattagctattgatttttttcattaatcacttcacactttagagaagtcataccctaaccacaaaagtt |
23665103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 23701968 - 23701742
Alignment:
| Q |
1 |
actagaaatgcttaacattatttggtcagaatcacattcaatctatattctacatttctacatcataaaatgtttg-gcaaacattgtcaactatggttg |
99 |
Q |
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|||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |
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| T |
23701968 |
actaaaaatgcttaaaatgatttggtcagaatcacattcaatctatattctacatttctacatcataaaatgtttgtggaaacattgtcaactacggttg |
23701869 |
T |
|
| Q |
100 |
ccccctttatctaatattcttgtaatgtcagaaccataagtactcagcaagcaatgaatgataaacagttccagcttctgcatttttagatatatgataa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23701868 |
ccccctttatctaatattcttgtaatgtcagaaccataagtactcagcaagcaatgaatgataaacagttccggcttctgcatttttagatatatgataa |
23701769 |
T |
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| Q |
200 |
tagattaccacataataactaaagaaaata |
229 |
Q |
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||||||| || |||||||||||||||| |
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| T |
23701768 |
tagattaagac---ataactaaagaaaata |
23701742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 23748327 - 23748464
Alignment:
| Q |
1 |
actagaaatgcttaacattatttggtcagaatcacattcaatctatattctacatttctacatcataaaatgtttg-gcaaacattgtcaactatggttg |
99 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||||||||||||||||||||||| | || |||||||| | |||| |||||||| |||||||||||||| |
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| T |
23748327 |
actagaaatgcttaaaattacttcgtcagaatcacattcaatctatattctacatgtgtatatcataaagtatttgtgcaaacatcgtcaactatggttg |
23748426 |
T |
|
| Q |
100 |
ccccctttatctaatattcttgtaatgtcagaaccata |
137 |
Q |
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||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
23748427 |
ccctctttatctaatattattgtaatgtcagaaccata |
23748464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 206
Target Start/End: Original strand, 23679721 - 23679819
Alignment:
| Q |
104 |
ctttatctaatattcttgtaatgtcagaaccataagtactcagcaagcaatgaatgataaacagttccagcttctgcatttttagatatatgataataga |
203 |
Q |
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||||||||||||||| |||||||| ||||||||| ||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||| | |
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| T |
23679721 |
ctttatctaatattcgtgtaatgttggaaccataaatactcagtaagcaatgg----taaacagttctagcttctgcatttctagatatatgataataaa |
23679816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 23701059 - 23701132
Alignment:
| Q |
17 |
attatttggtcagaatcacattcaatctatattctacatttctacatcataaaatgtttg-gcaaacattgtca |
89 |
Q |
| |
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||||||||| |||||||||||||||||||| || ||||||||||||| ||||| | |||| || |||||||||| |
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| T |
23701059 |
attatttggacagaatcacattcaatctatgttatacatttctacattataaagtatttgtgcgaacattgtca |
23701132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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