View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15588_low_4 (Length: 330)
Name: NF15588_low_4
Description: NF15588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15588_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 34720021 - 34720167
Alignment:
| Q |
1 |
agatcctttcctaaaatnnnnnnntaaagcaaattagcaaagcttgcgtactagctaaatacctggtatgctattaacatcaaccatctgttttgaaact |
100 |
Q |
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| T |
34720021 |
agatcctttcctaaaataaaaaaataaagcaaattagcaaagcttgtgtactagctaaatacctggtatgctattaacatcaaccatctgttttgaaact |
34720120 |
T |
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| Q |
101 |
tgtagttactttgatatttaatttttattcacaacctaacaaacttc |
147 |
Q |
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| T |
34720121 |
tgtacttactttgatatttaatttttattcacaacctaacaaacttc |
34720167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 34720237 - 34720331
Alignment:
| Q |
218 |
gtaagcctcaaaaaatcatatcttacctcagaaataccccttaaattttcccttataatttctcttctgcgatcttgtactaaaccacgcaatcc |
312 |
Q |
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| T |
34720237 |
gtaagcctcaaaaaatcatatcttacctcagaaataccccttaaattttcccttataatttctcttctgcgatcttgtactaaaccacgcaatcc |
34720331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 34720669 - 34720749
Alignment:
| Q |
224 |
ctcaaaaaatcatatcttacctcagaaataccccttaaattttcccttataatttctcttctgcgatcttgtactaaacca |
304 |
Q |
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| T |
34720669 |
ctcaagaaaccatatcttacctcaggcatacccgttgaattttcccttataatttctcttccgcaatcttgtactaaacca |
34720749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 34715280 - 34715333
Alignment:
| Q |
26 |
aaagcaaattagcaaagcttgcgtactagctaaatacctggtatgctattaaca |
79 |
Q |
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|||| |||||| ||||||||| ||| ||||||||||||| ||||||||| |||| |
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| T |
34715280 |
aaagtaaattatcaaagcttgtgtagtagctaaatacctagtatgctatcaaca |
34715333 |
T |
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