View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15588_low_6 (Length: 316)
Name: NF15588_low_6
Description: NF15588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15588_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 49656361 - 49656677
Alignment:
| Q |
1 |
ccaacaggttgtgttagaagtattaatctaaagttaaaagatgaagatagttgatttagcttttcttatgcgtaccnnnnnnnt-ctgaatagtgacta- |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
49656361 |
ccaacaggttgtgttagaagtattaatctaaagttaaaagatgaagatagttgatttagcttttctgatgcgtaccaaaaaaaagctgaatagtgactaa |
49656460 |
T |
|
| Q |
99 |
------tagatacaaaattttaaaatcacacttgcccaaaaaaggaacttagtatcacagttctgttattacagtgaagattagattggataactatgga |
192 |
Q |
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|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49656461 |
tgactatatatacaaaattttaaaatcacaattgcccaaaaaaggaacttagtatcacagttctgttattacagtgaagattagattggataactatgga |
49656560 |
T |
|
| Q |
193 |
ctactatatgatttgacgcgatagagatctcgcgttatcataggtttaagagaagggtcagagtcagaggcattaaaagtcttatttgaatgagactcat |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49656561 |
ctactatatgatttgacgcgatagagatctcgcgttatcataggtttaagagaagggtcagagtcagaggcattaaaagtcttatttgaatgagactcat |
49656660 |
T |
|
| Q |
293 |
ttcattcattcatctca |
309 |
Q |
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||||||||||||||||| |
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| T |
49656661 |
ttcattcattcatctca |
49656677 |
T |
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