View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_high_11 (Length: 479)
Name: NF15589_high_11
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Original strand, 11801222 - 11801669
Alignment:
| Q |
20 |
caaataagcaaaaaccacaaagaacaagaatttccacttagatgctccaatggagaaaaagagacacaaacatgtccaagagactaccctacaaaacata |
119 |
Q |
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| T |
11801222 |
caaataagcaaaaaccacaaagaacaagaatttccacttagatgcaccaatggagaaaaagagacacaaacatgtccaagagactaccctacaaaacata |
11801321 |
T |
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| Q |
120 |
agccaacaaatcaaaatagccatacttgtccctcattctttagatggatccatgaagatttaaaagcatggaaagaaaaagggatcactagggaaatgtt |
219 |
Q |
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| T |
11801322 |
acccaacaaatcaaaatagccatacttgtccttcattctttagatggatccatgaagatttaaaaccatggaaagaaaaagggatcactagggaaatgtt |
11801421 |
T |
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| Q |
220 |
ggagggtgcaaaaagaacagcaaattttaaggttgtgattgtggatggaaaaatgtatgtggagaagtataagaagtcaattcaaacaagagatgtgttc |
319 |
Q |
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| T |
11801422 |
ggagggtgcaaaaagaacagcaaattttaaggttgtgattgtggatggaaaaatgtatgtggagaagtataggaagtcaattcaaacaagagatgtgttc |
11801521 |
T |
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| Q |
320 |
actttgtggggtattttgcaattattgagaatgtttcctggcaagttacctgatttggaacttatgtttgattgtgaagataggcctgttattcataaga |
419 |
Q |
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| T |
11801522 |
actttgtggggtattttgcaattattgagaatgtttcctggcaagttacctgatttggaacttatgtttgattgtgaagataggcctgttattcataagg |
11801621 |
T |
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| Q |
420 |
gtaattttcaaggtccaaatgcttcaccacctcctttgtttagatatt |
467 |
Q |
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| T |
11801622 |
gtaattttcaaggtccaaatgcttcaccacctcctttgtttagatatt |
11801669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 85 - 467
Target Start/End: Original strand, 11808569 - 11808951
Alignment:
| Q |
85 |
acaaacatgtccaagagactaccctacaaaacataagccaacaaatcaaaatagccatacttgtccctcattctttagatggatccatgaagatttaaaa |
184 |
Q |
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| T |
11808569 |
acaaaaatgtccaagagacaaccctacaacacataacccaacaaatctcaacaaccatgtttgtccctcatactttagatggatccatgaagatcttaaa |
11808668 |
T |
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| Q |
185 |
gcatggaaagaaaaagggatcactagggaaatgttggagggtgcaaaaagaacagcaaattttaaggttgtgattgtggatggaaaaatgtatgtggaga |
284 |
Q |
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| T |
11808669 |
ccatggagagaaaaagggatcacaaggaacatgttgaaaaaggcaaaaaagacagcacatttcaagcttgtgattgtggatggaaaaatgtatgtggaaa |
11808768 |
T |
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| Q |
285 |
agtataagaagtcaattcaaacaagagatgtgttcactttgtggggtattttgcaattattgagaatgtttcctggcaagttacctgatttggaacttat |
384 |
Q |
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| T |
11808769 |
agtataggaagtcaattcaaacaagagatgtgttcactttgtggggtattttgcaattattgagattgtaccctggcaagttgcctgatttggaacttat |
11808868 |
T |
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| Q |
385 |
gtttgattgtgaagataggcctgttattcataagagtaattttcaaggtccaaatgcttcaccacctcctttgtttagatatt |
467 |
Q |
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| T |
11808869 |
gtttgattgtgaagataagcctgttgttcctttggataagtttcaaggaccaaatgcttcaccaccaccattgtttagatatt |
11808951 |
T |
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