View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_high_17 (Length: 403)
Name: NF15589_high_17
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 35800923 - 35800797
Alignment:
| Q |
30 |
cattacaatttcatagataatatattttttgagggaattttatagataatatattggtaattcataaaattgagatactctactattttaagccatggtt |
129 |
Q |
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| T |
35800923 |
cattacaatttcatagataatatattttttgagggaattttatagataatatattggtaattcataaaattgagatactctactattttaagccatggtt |
35800824 |
T |
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| Q |
130 |
accaattgaggtacaaatattcctaat |
156 |
Q |
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| T |
35800823 |
accaattgaggtacaaatattcctaat |
35800797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 255 - 395
Target Start/End: Complemental strand, 35800697 - 35800560
Alignment:
| Q |
255 |
aacctcggaacacttcttctctctgtgttccaaatcatcatcatgtttttctctagttccataatgttcttctaaaatctgtgtctgtgttattcctttt |
354 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35800697 |
aacctcggaacacttct---ctctgtgttccaaatcatcttcatgtttttctctagttccataatgttcttctaaaatctgtgtctgtgttatccctttt |
35800601 |
T |
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| Q |
355 |
cacaaagtttatcaatttttgcttaattgtgtgttcatctc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |
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| T |
35800600 |
cacaaagtttatcaatttttgcttaattgtgtgttcttctc |
35800560 |
T |
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