View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_high_18 (Length: 397)
Name: NF15589_high_18
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 28 - 383
Target Start/End: Complemental strand, 44708101 - 44707748
Alignment:
| Q |
28 |
attagcttgaaataatgagaattaatatgtaaaaagaatatttacaccaacttggtattatttccaccttgcacattagatgaatctaacggctgagaac |
127 |
Q |
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| T |
44708101 |
attagcttgaaataatgagaattaatatgtaaaaagaatatttacaccaacttggtattatttccacattgcacattagatgaatctaacggctgagaac |
44708002 |
T |
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| Q |
128 |
aaggcaggagagagcgctatcatattacttcttctgttccatattataaattatatactaaagaactatcatattttacattttacatgtgacttgtcgc |
227 |
Q |
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| T |
44708001 |
aaggcaggagagagcgctatcatattacttcttctgctccatattataaattatatac-aaagaactatcat-------attttacatgtggcttgtcgc |
44707910 |
T |
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| Q |
228 |
tctatgatattaatgaatattatta-ttttttagtacacacttagcctattattaatgtctc-----tttcttcaatttttgagatcgtaaggtcatcca |
321 |
Q |
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| T |
44707909 |
tctacgatattaatgaatattattatttttttagtacacacttagcctattattaatgtctctttaatttcttcaattcttgagattgtaaggtcattca |
44707810 |
T |
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| Q |
322 |
tgtggtggtgttttacctatttagcactatattaaatagacatcatcattgtagagtataat |
383 |
Q |
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| T |
44707809 |
tgtggtggtgctttacctatttagcactatattaaatagacatcatcattgtggagtataat |
44707748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 37996931 - 37996976
Alignment:
| Q |
338 |
ctatttagcactatattaaatagacatcatcattgtagagtataat |
383 |
Q |
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| T |
37996931 |
ctatttagcaccacattaaatagacatcctcattgtggagtataat |
37996976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 4167391 - 4167337
Alignment:
| Q |
329 |
gtgttttacctatttagcactatattaaatagacatcatcattgtagagtataat |
383 |
Q |
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| T |
4167391 |
gtgtttcacctatttagcaccatattaaatagacaccctcattatggagtataat |
4167337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 37333198 - 37333244
Alignment:
| Q |
336 |
acctatttagcactatattaaatagacatcatcattgtagagtataa |
382 |
Q |
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| T |
37333198 |
acctatttagcaccacattaaatagacatcctcattgtggagtataa |
37333244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 360
Target Start/End: Complemental strand, 26452006 - 26451974
Alignment:
| Q |
328 |
ggtgttttacctatttagcactatattaaatag |
360 |
Q |
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| T |
26452006 |
ggtgttttatctatttagcactatattaaatag |
26451974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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