View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_high_20 (Length: 371)
Name: NF15589_high_20
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_high_20 |
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| [»] scaffold1396 (1 HSPs) |
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| [»] scaffold0658 (1 HSPs) |
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Alignment Details
Target: scaffold1396 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold1396
Description:
Target: scaffold1396; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 762 - 1113
Alignment:
| Q |
1 |
gggaaaacaagcatgagatggagggcgtagctgatacgaacgacgtcgttgagaatattgctataagggatgccaagatcagtatcaaagttggctagca |
100 |
Q |
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| T |
762 |
gggaaaacaagcatgagatggagggcgtagctgatacgaacgacgtcattgagaatattgctataagggatgccaagatcagtatcaaagttggctagca |
861 |
T |
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| Q |
101 |
catcatcaagagttgactcgccaaatagtaggaacccaaatagagctgtaagaatgtatatactagaacatagaacaagtgatgcacttataactggttg |
200 |
Q |
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| T |
862 |
catcatcaagagttgactcgccaaatagtaggaacccaaatagagctgtaagaatgtatatactagaacatagaaccaatgatgcacttataactggttg |
961 |
T |
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| Q |
201 |
tattggtgaagagtctccaagttcattgtctattgtatgcactgcaaaggataatacttaagttaaaatatatattattcaagcacatcaaatttctcag |
300 |
Q |
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| T |
962 |
aattggtgaagagtctccaagttcattgtctattgtatgcactgcaaaggataatacttaagttaaaatatatattattcaagcacatcaaatttctcag |
1061 |
T |
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| Q |
301 |
tactattatttgcaatatcaaatttcagagttcagtcggggaagtgtcatct |
352 |
Q |
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| T |
1062 |
tactattatttgcaatatcaaatttcagagttcagtcggggaagtgtcatct |
1113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0658 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0658
Description:
Target: scaffold0658; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 8534 - 8709
Alignment:
| Q |
1 |
gggaaaacaagcatgagatggagggcgtagctgatacgaacgacgtcgttgagaatattgctataagggatgccaagatcagtatcaaagttggctagca |
100 |
Q |
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| T |
8534 |
gggaaaacaagcatgagatggagggcgtagctgatacgaacgacgtcattgagaatattgctataagggatgccaagatcagtatcaaagttggctagca |
8633 |
T |
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| Q |
101 |
catcatcaagagttgactcgccaaatagtaggaacccaaatagagctgtaagaatgtatatactagaacatagaac |
176 |
Q |
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| T |
8634 |
catcatcaagagttgactcgccaaatagtaggaacccaaatagagctgtaagaatgtatatactagaacatagaac |
8709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 5963722 - 5963655
Alignment:
| Q |
73 |
ccaagatcagtatcaaagttggctagcacatcatcaagagttgactcgccaaatagtaggaacccaaa |
140 |
Q |
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| T |
5963722 |
ccaaaatcagtatcaaaattggcaagcacatcatcaagagttccttcaccaaatagaaggaacccaaa |
5963655 |
T |
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