View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_high_32 (Length: 273)
Name: NF15589_high_32
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 36204388 - 36204132
Alignment:
| Q |
11 |
ataattctataccaaaacatcctttaacaattgatcacatgcatgcattgtacaaaacacaatcatgaccagaaagggcaagaagga------------c |
98 |
Q |
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| T |
36204388 |
ataattctataccaaaacatcctttaacaattgatcacatgcatgcattgtacaaaacacaatcatgaccagaaagggcaagaaggattacatagcaacc |
36204289 |
T |
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| Q |
99 |
acagtccaagggttttgaaggaaaccaaaaagctggacattaaacaaggaaaaacaagtacctcatgactaaaatatgattcaggaagaaaagaaagatt |
198 |
Q |
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| T |
36204288 |
acagtccaagggttttgaaggaaaccacaaagctggacattaaacaaggaaaaacaagtacctcatgactaaaatatgattcaggaggaaaagaaagatt |
36204189 |
T |
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| Q |
199 |
ctctccttctttggtagaagtagaaccaagctcattcttggaagcattggggtcacaact |
258 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36204188 |
ctctc---ctttggtagaagtagaaccaagctcattcttggaagcattggggtcccaact |
36204132 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 11068470 - 11068504
Alignment:
| Q |
16 |
tctataccaaaacatcctttaacaattgatcacat |
50 |
Q |
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| T |
11068470 |
tctataccaaaacattctttaacaattgatcacat |
11068504 |
T |
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