View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15589_high_42 (Length: 242)

Name: NF15589_high_42
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15589_high_42
NF15589_high_42
[»] chr1 (9 HSPs)
chr1 (20-164)||(45288327-45288478)
chr1 (203-242)||(16449553-16449592)
chr1 (203-242)||(16459127-16459166)
chr1 (192-242)||(27746169-27746219)
chr1 (205-242)||(26240882-26240919)
chr1 (205-242)||(24847783-24847820)
chr1 (205-242)||(24848437-24848474)
chr1 (205-242)||(26240114-26240151)
chr1 (205-242)||(27745556-27745593)
[»] chr4 (15 HSPs)
chr4 (20-157)||(31608309-31608453)
chr4 (205-242)||(34941502-34941539)
chr4 (203-242)||(24666127-24666166)
chr4 (204-235)||(25055108-25055139)
chr4 (203-242)||(51386454-51386493)
chr4 (204-242)||(42792774-42792812)
chr4 (205-242)||(14527587-14527624)
chr4 (205-242)||(26354243-26354280)
chr4 (205-242)||(52129421-52129458)
chr4 (205-237)||(18362935-18362967)
chr4 (203-235)||(18363671-18363703)
chr4 (203-235)||(34451455-34451487)
chr4 (203-235)||(36599225-36599257)
chr4 (205-237)||(36599959-36599991)
chr4 (203-239)||(45393979-45394015)
[»] chr7 (13 HSPs)
chr7 (203-242)||(36611505-36611544)
chr7 (203-241)||(17114143-17114181)
chr7 (205-242)||(30580635-30580672)
chr7 (204-242)||(42818564-42818602)
chr7 (205-242)||(767136-767173)
chr7 (205-242)||(3314955-3314992)
chr7 (205-242)||(30581277-30581314)
chr7 (205-242)||(41617992-41618029)
chr7 (205-242)||(41965788-41965825)
chr7 (205-242)||(46491699-46491736)
chr7 (205-241)||(24874590-24874626)
chr7 (210-242)||(36611556-36611588)
chr7 (205-241)||(41965112-41965148)
[»] chr3 (12 HSPs)
chr3 (203-242)||(20807935-20807974)
chr3 (209-241)||(43479523-43479555)
chr3 (206-242)||(54308454-54308490)
chr3 (205-236)||(49350287-49350318)
chr3 (204-242)||(4706967-4707005)
chr3 (205-242)||(15287567-15287604)
chr3 (205-242)||(20808618-20808655)
chr3 (205-242)||(47571196-47571233)
chr3 (207-236)||(48626131-48626160)
chr3 (205-242)||(49349676-49349713)
chr3 (206-242)||(9830573-9830609)
chr3 (205-241)||(54751796-54751832)
[»] chr5 (12 HSPs)
chr5 (204-242)||(27345930-27345968)
chr5 (203-242)||(39937917-39937956)
chr5 (204-235)||(40372178-40372209)
chr5 (204-242)||(23253497-23253535)
chr5 (205-235)||(29594906-29594936)
chr5 (204-242)||(35524888-35524926)
chr5 (205-242)||(2029058-2029095)
chr5 (205-242)||(24565573-24565610)
chr5 (205-242)||(24606609-24606646)
chr5 (205-242)||(29595605-29595642)
chr5 (205-242)||(39936255-39936292)
chr5 (202-242)||(23257316-23257356)
[»] chr2 (7 HSPs)
chr2 (195-241)||(127023-127069)
chr2 (205-242)||(44987550-44987587)
chr2 (205-236)||(127752-127783)
chr2 (205-242)||(20606932-20606969)
chr2 (209-242)||(30514553-30514586)
chr2 (200-232)||(7754007-7754039)
chr2 (210-242)||(44297425-44297457)
[»] chr8 (8 HSPs)
chr8 (204-242)||(42663276-42663314)
chr8 (205-242)||(4402298-4402335)
chr8 (203-236)||(5434030-5434063)
chr8 (205-242)||(16911057-16911094)
chr8 (205-242)||(22632979-22633016)
chr8 (205-242)||(26847097-26847134)
chr8 (205-242)||(42094009-42094046)
chr8 (206-242)||(22632323-22632359)
[»] scaffold0627 (1 HSPs)
scaffold0627 (205-242)||(6464-6501)
[»] chr6 (1 HSPs)
chr6 (205-242)||(13084890-13084927)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 45288478 - 45288327
Alignment:
Q  20 tttactcataatcaagttctgaggtcaaagaaaaatgtgat--------ctcatggatggtaaattatcatttttatgttttactcatttgtttgatgtt 111  Q
    ||||||||||||||||| | ||||| ||||||||| |||||        |||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  45288478 tttactcataatcaagtgccgaggttaaagaaaaaggtgatatgagtctctcatggatgctaaattaccatttttatgttt-actcatttgtttgatgtt 45288380  T
Q  112 tataattgaaattggattttacaaatgttttattcaccttttattacggataa 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45288379 tataattgaaattggattttacaaatgttttattcaccttttattacagataa 45288327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 16449553 - 16449592
Alignment:
Q  203 atggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  16449553 atggtggattctagggtgagggttcaattaagtccctcac 16449592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 16459127 - 16459166
Alignment:
Q  203 atggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  16459127 atggtggattctagggtgagggttcaattaagtccctcac 16459166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 27746219 - 27746169
Alignment:
Q  192 atcataatttcatggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||| ||| |||||||||||||| ||||||||||||||||||| |||||    
T  27746219 atcatattttaatggtggattctagcgtgagggttcaattaagtccctcac 27746169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 26240919 - 26240882
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||||||||||||||| |||||    
T  26240919 ggtggattctagggtgagggttcaattaagtccctcac 26240882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 24847783 - 24847820
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  24847783 ggtggattctagggtgagggttctattaagtccctcac 24847820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 24848474 - 24848437
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  24848474 ggtggattctagggtgagggttctattaagtccctcac 24848437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 26240114 - 26240151
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  26240114 ggtggattctagggtgagggatcaattaagtccctcac 26240151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 27745556 - 27745593
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  27745556 ggtggattctaaggtgagggttcaattaagtccctcac 27745593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 31608309 - 31608453
Alignment:
Q  20 tttactcataatcaagttctgaggtcaaagaaaaatgtgat--------ctcatggatggtaaattatcatttttatgttttactcatttgtttgatgtt 111  Q
    ||||||||||||||||| | ||||| ||||||||| |||||        |||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  31608309 tttactcataatcaagtgccgaggttaaagaaaaaggtgatatgagtctctcatggatgctaaattaccatttttatgttt-actcatttgtttgatgtt 31608407  T
Q  112 tataattgaaattggattttacaaatgttttattcaccttttatta 157  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  31608408 tataattgaaattggattttacaaatgttttattcaacttttatta 31608453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 34941502 - 34941539
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||||||||||||||| |||||    
T  34941502 ggtggattctagggtgagggttcaattaagtccctcac 34941539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 24666127 - 24666166
Alignment:
Q  203 atggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  24666127 atggtggattctagggtgagggatcaattaagtccctcac 24666166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Original strand, 25055108 - 25055139
Alignment:
Q  204 tggtggattctagggtgagggttcaattaagt 235  Q
    ||||||||||||||||||||||||||||||||    
T  25055108 tggtggattctagggtgagggttcaattaagt 25055139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 51386454 - 51386493
Alignment:
Q  203 atggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  51386454 atggtggattttagggtgagggttcaattaagtccctcac 51386493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 42792774 - 42792812
Alignment:
Q  204 tggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  42792774 tggtggattctagggtgagggtccaattaagtccctcac 42792812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 14527624 - 14527587
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  14527624 ggtggattctagggtgagggatcaattaagtccctcac 14527587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 26354280 - 26354243
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  26354280 ggtgggttctagggtgagggttcaattaagtccctcac 26354243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 52129421 - 52129458
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  52129421 ggtggattctaaggtgagggttcaattaagtccctcac 52129458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 18362935 - 18362967
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtct 237  Q
    |||||||||||||||||||| ||||||||||||    
T  18362935 ggtggattctagggtgagggatcaattaagtct 18362967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 18363703 - 18363671
Alignment:
Q  203 atggtggattctagggtgagggttcaattaagt 235  Q
    ||||| |||||||||||||||||||||||||||    
T  18363703 atggtcgattctagggtgagggttcaattaagt 18363671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 34451487 - 34451455
Alignment:
Q  203 atggtggattctagggtgagggttcaattaagt 235  Q
    |||||||||||||||||||||| ||||||||||    
T  34451487 atggtggattctagggtgagggatcaattaagt 34451455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 36599225 - 36599257
Alignment:
Q  203 atggtggattctagggtgagggttcaattaagt 235  Q
    ||||| |||||||||||||||||||||||||||    
T  36599225 atggtcgattctagggtgagggttcaattaagt 36599257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 36599991 - 36599959
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtct 237  Q
    |||||||||||||||||||| ||||||||||||    
T  36599991 ggtggattctagggtgagggatcaattaagtct 36599959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 45393979 - 45394015
Alignment:
Q  203 atggtggattctagggtgagggttcaattaagtctct 239  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  45393979 atggtgaattctagagtgagggttcaattaagtctct 45394015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 36611544 - 36611505
Alignment:
Q  203 atggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  36611544 atggtggattctagggtgagggttcaattaaatctctcac 36611505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 17114143 - 17114181
Alignment:
Q  203 atggtggattctagggtgagggttcaattaagtctctca 241  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  17114143 atggtggattctagggtgagggttcaattaagtccctca 17114181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 30580635 - 30580672
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||||| |||||||||||||||    
T  30580635 ggtggattctagggtgagggtttaattaagtctctcac 30580672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 42818602 - 42818564
Alignment:
Q  204 tggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  42818602 tggtgaattctagggtgagggttcaattaagtccctcac 42818564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 767136 - 767173
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  767136 ggtggattctagggtgagggtccaattaagtccctcac 767173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 3314955 - 3314992
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  3314955 ggtggattctacggtgagggttcaattaagtccctcac 3314992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 30581314 - 30581277
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  30581314 ggtgaattctagggtgagggttcaattaagtccctcac 30581277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 41618029 - 41617992
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  41618029 ggtggattctagagtgagggtccaattaagtctctcac 41617992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 41965825 - 41965788
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  41965825 ggtggattctagggtgagggtccaattaagtccctcac 41965788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 46491736 - 46491699
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  46491736 ggtggattctagggtgagggttcaactaagtccctcac 46491699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 24874626 - 24874590
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctca 241  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  24874626 ggtggattctagggtgagggttcaattaggtccctca 24874590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 36611556 - 36611588
Alignment:
Q  210 attctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||||||||| |||||    
T  36611556 attctagggtgagggttcaattaagtccctcac 36611588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 41965112 - 41965148
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctca 241  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  41965112 ggtggattctagggtgagggtccaattaagtccctca 41965148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 20807935 - 20807974
Alignment:
Q  203 atggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  20807935 atggtggattctagggtgagggttcaattaagtccctcac 20807974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 43479555 - 43479523
Alignment:
Q  209 gattctagggtgagggttcaattaagtctctca 241  Q
    |||||||||||||||||||||||||||||||||    
T  43479555 gattctagggtgagggttcaattaagtctctca 43479523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 54308454 - 54308490
Alignment:
Q  206 gtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||||||||||||| |||||    
T  54308454 gtggattctagggtgagggttcaattaagtccctcac 54308490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 236
Target Start/End: Complemental strand, 49350318 - 49350287
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtc 236  Q
    ||||||||||||||||||||||||||||||||    
T  49350318 ggtggattctagggtgagggttcaattaagtc 49350287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 4707005 - 4706967
Alignment:
Q  204 tggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  4707005 tggtggattctagggtgagggttctattaagtccctcac 4706967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 15287567 - 15287604
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  15287567 ggtggattctagggtgagggtccaattaagtccctcac 15287604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 20808655 - 20808618
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  20808655 ggtggattctagggtgagggttcaagtaagtccctcac 20808618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 47571196 - 47571233
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  47571196 ggtggattctagggtgagggatcaattaagtccctcac 47571233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 48626160 - 48626131
Alignment:
Q  207 tggattctagggtgagggttcaattaagtc 236  Q
    ||||||||||||||||||||||||||||||    
T  48626160 tggattctagggtgagggttcaattaagtc 48626131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 49349676 - 49349713
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctcac 49349713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 9830573 - 9830609
Alignment:
Q  206 gtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  9830573 gtggattctcgggtgagggttcaattaagtccctcac 9830609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 54751796 - 54751832
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctca 241  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  54751796 ggtggattctaggatgagggttcaaataagtctctca 54751832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 27345968 - 27345930
Alignment:
Q  204 tggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  27345968 tggtggattctagggtgagggttcaattaagtccctcac 27345930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 39937956 - 39937917
Alignment:
Q  203 atggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  39937956 atggtggattctagggtgagggttcagttaagtccctcac 39937917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Complemental strand, 40372209 - 40372178
Alignment:
Q  204 tggtggattctagggtgagggttcaattaagt 235  Q
    ||||||||||||||||||||||||||||||||    
T  40372209 tggtggattctagggtgagggttcaattaagt 40372178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 23253535 - 23253497
Alignment:
Q  204 tggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  23253535 tggtggattctagggtgagggtccaattaagtccctcac 23253497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 235
Target Start/End: Original strand, 29594906 - 29594936
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagt 235  Q
    |||||||||||||||||||||||||||||||    
T  29594906 ggtggattctagggtgagggttcaattaagt 29594936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 35524926 - 35524888
Alignment:
Q  204 tggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  35524926 tggtggattctagggtgagggatcaattaagtttctcac 35524888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 2029095 - 2029058
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  2029095 ggtggattctagggtgagggctcaattaagtccctcac 2029058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 24565573 - 24565610
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||||||||||| || |||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcac 24565610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 24606609 - 24606646
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||||||||||| || |||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcac 24606646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 29595642 - 29595605
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  29595642 ggtggattctagcgtgagggttcaattaagtccctcac 29595605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 39936255 - 39936292
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  39936255 ggtggattctaaggtgagggttcaattaagtccctcac 39936292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 23257316 - 23257356
Alignment:
Q  202 catggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||| |||||||| |||||||||| |||||    
T  23257316 catggtggattctagagtgagggtccaattaagtccctcac 23257356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 127023 - 127069
Alignment:
Q  195 ataatttcatggtggattctagggtgagggttcaattaagtctctca 241  Q
    ||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  127023 ataatttaatggtggattctagggtgagggttcaactaagtccctca 127069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 44987587 - 44987550
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||| |||||||||||||||||    
T  44987587 ggtggattctagggtgagggatcaattaagtctctcac 44987550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 236
Target Start/End: Complemental strand, 127783 - 127752
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtc 236  Q
    ||||||||||||||||||||||||||||||||    
T  127783 ggtggattctagggtgagggttcaattaagtc 127752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 20606969 - 20606932
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  20606969 ggtgaattctagggtgagggttcaattaagtccctcac 20606932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 30514586 - 30514553
Alignment:
Q  209 gattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||| ||||||||||||||||||    
T  30514586 gattctagggtgaggattcaattaagtctctcac 30514553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 7754007 - 7754039
Alignment:
Q  200 ttcatggtggattctagggtgagggttcaatta 232  Q
    |||||||||||||||||||||||||| ||||||    
T  7754007 ttcatggtggattctagggtgagggtccaatta 7754039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 44297457 - 44297425
Alignment:
Q  210 attctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||||||||| |||||    
T  44297457 attctagggtgagggttcaattaagtccctcac 44297425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 42663276 - 42663314
Alignment:
Q  204 tggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  42663276 tggtggattctagggtgagagtccaattaagtctctcac 42663314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 4402335 - 4402298
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  4402335 ggtggattctagggtgagggttctattaagtccctcac 4402298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 5434030 - 5434063
Alignment:
Q  203 atggtggattctagggtgagggttcaattaagtc 236  Q
    ||||||||||||||||||||||| ||||||||||    
T  5434030 atggtggattctagggtgagggtccaattaagtc 5434063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 16911094 - 16911057
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  16911094 ggtggattctagggtgagggctcaattaagtccctcac 16911057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 22633016 - 22632979
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  22633016 ggtggattctagggtgagggatcaattaagtccctcac 22632979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 26847097 - 26847134
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  26847097 ggtggattctagggtgagggtccaattaagtccctcac 26847134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 42094009 - 42094046
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  42094009 ggtggattctagggtgagggatcaattaagtccctcac 42094046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 22632323 - 22632359
Alignment:
Q  206 gtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  22632323 gtggattctagggtgagggatcaattaagtccctcac 22632359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 6464 - 6501
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  6464 ggtgggttctagggtgagggttcaattaagtccctcac 6501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 13084927 - 13084890
Alignment:
Q  205 ggtggattctagggtgagggttcaattaagtctctcac 242  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  13084927 ggtgaattctagggtgagggttcaactaagtctctcac 13084890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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