View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15589_low_1 (Length: 841)
Name: NF15589_low_1
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 799; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 799; E-Value: 0
Query Start/End: Original strand, 1 - 834
Target Start/End: Complemental strand, 30275360 - 30274529
Alignment:
| Q |
1 |
ggagcaagatagttctagaatcaagttacctgagtcacttagacaacaggtttctattttggccaatttgtcaacattggtgcagtttctctctaccatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275360 |
ggagcaagatagttctagaatcaagttacctgagtcacttacacaacaggtttctattttggccaatttgtcaacattggtgcagtttctctctaccatg |
30275261 |
T |
|
| Q |
101 |
gtcaaagatatcttcagcatggattcacaattggtggagaaccactcagttggttttaagcatcatgaactcgatgtttttctgatgtttattgaagagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275260 |
gtcaaagatatcttcagcatggattcacaattggtggagaaccactcagttggttttaagcatcatgaactcgatgtttttctgatgtttattgaagagg |
30275161 |
T |
|
| Q |
201 |
gcttcaataagttgagaaatgtgttctgccagcaattaattctcagagctttgtctacttgtagtagccatgaaatagcttcagctattcactataacga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275160 |
gcttcaataagttgagaaatgtgttctgccagcaattaattctcagagctttgtctacttgtagcagccatgaaatagcttcagctattcactataacga |
30275061 |
T |
|
| Q |
301 |
ccaatttgatgcaaacatgatccacaatccaatgccttctgccatttttcaggtatgttttcactgataattccctaacaaatagtttcttctgattttg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30275060 |
ccaatttgatgcaaacatgatccacaatccaatgccttctgccatttttcaggtatgttttcactgataattccctaacaaatagttgcttctgattttg |
30274961 |
T |
|
| Q |
401 |
catctatatatgcttatgtaagcttttatatttagtataaagtctagtctctgtcatgtgtaggttttatttttagagctgaggaaaattgaaaaacttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30274960 |
catctatatatgcttatgtaagcttttatatttagtataaagtctagtctctgtcatgtgtaggttttatttttagagctgaggaaaattgaaaaacttg |
30274861 |
T |
|
| Q |
501 |
atgaagaaaatgttttcgaagtgaattggttaatggaattactgagagaggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgc |
600 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30274860 |
aagaagaaaatgtgttcgaagtgaattggttaatggaattactgagagaggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgc |
30274761 |
T |
|
| Q |
601 |
aacaacagaagagcatgttagcttacaaactgatgaagccaaacaggttttccacttccctcccttctgtttattattgagtttcactatgagagagttt |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30274760 |
aacaacagaagagcatgttagcttacaaactgatgaagccaaacaggttttccacttccctcccttctgtttattattgagtttcactatg--agagttt |
30274663 |
T |
|
| Q |
701 |
tgaaaacaacatgcttctcaatttctcatccattatctttattccttgaacagtttattatggatgtgcaattcctagtggaaattggaatgtatggagg |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30274662 |
tgaaaacaacatgcttctcaatttctcatccattatctttattccttgaacagtttattatggatgtgcaattcctagtggaaattggaatgtatggagg |
30274563 |
T |
|
| Q |
801 |
atatttctccactgatcctttacttcatctcact |
834 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
30274562 |
atatttctccactgatcctttacttcttctcact |
30274529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 518 - 675
Target Start/End: Original strand, 46270434 - 46270591
Alignment:
| Q |
518 |
gaagtgaattggttaatggaattactgagagaggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgcaacaacagaagagcatg |
617 |
Q |
| |
|
|||||||||||||| | | |||||| ||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||| |||||||||||||| |
|
|
| T |
46270434 |
gaagtgaattggttgaaaggattactaagagaggtgatggtgtgtaagtttatttgggtttccaagaacaaagagatcaatgcaataacagaagagcatg |
46270533 |
T |
|
| Q |
618 |
ttagcttacaaactgatgaagccaaacaggttttccacttccctcccttctgtttatt |
675 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||| | |||||| |||| |||||||| |
|
|
| T |
46270534 |
tgagcttacaaactgatgaggccaaacaggtttttgatttccctaccttgtgtttatt |
46270591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 484
Target Start/End: Original strand, 46270328 - 46270422
Alignment:
| Q |
390 |
ttctgattttgcatctatatatgcttatgtaagcttttatatttagtataaagtctagtctctgtcatgtgtaggttttatttttagagctgagg |
484 |
Q |
| |
|
||||||||||||||| | |||||||||| ||| ||| |||||||||| |||| |||||| || |||||| ||| ||||||| |||| |||||| |
|
|
| T |
46270328 |
ttctgattttgcatccaagtatgcttatgcaagatttggtatttagtatgaagtttagtctatgccatgtgcaggctttatttctagaactgagg |
46270422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University