View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15589_low_10 (Length: 589)

Name: NF15589_low_10
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15589_low_10
NF15589_low_10
[»] chr6 (10 HSPs)
chr6 (309-573)||(7625927-7626183)
chr6 (62-363)||(7626184-7626479)
chr6 (1-62)||(7304138-7304197)
chr6 (1-65)||(34792018-34792080)
chr6 (28-62)||(2165327-2165361)
chr6 (28-62)||(2176960-2176994)
chr6 (1-61)||(6997563-6997621)
chr6 (28-61)||(9395364-9395397)
chr6 (28-61)||(16121163-16121196)
chr6 (28-61)||(27790273-27790306)
[»] chr1 (17 HSPs)
chr1 (1-63)||(22674710-22674770)
chr1 (1-62)||(1100216-1100275)
chr1 (1-76)||(8577515-8577588)
chr1 (1-58)||(15059642-15059698)
chr1 (1-61)||(12990482-12990540)
chr1 (28-63)||(41564918-41564953)
chr1 (1-62)||(21854477-21854536)
chr1 (28-62)||(30414874-30414908)
chr1 (28-61)||(16252786-16252819)
chr1 (1-61)||(26760562-26760620)
chr1 (1-61)||(31244746-31244804)
chr1 (1-61)||(40118728-40118786)
chr1 (4-61)||(41425242-41425297)
chr1 (1-61)||(649768-649827)
chr1 (1-60)||(5574272-5574329)
chr1 (1-65)||(31826946-31827009)
chr1 (28-60)||(50460739-50460771)
[»] scaffold0651 (1 HSPs)
scaffold0651 (1-63)||(4859-4919)
[»] chr4 (27 HSPs)
chr4 (1-63)||(4577555-4577615)
chr4 (1-63)||(31318751-31318811)
chr4 (1-62)||(29577449-29577508)
chr4 (3-63)||(1987728-1987786)
chr4 (1-61)||(36110134-36110192)
chr4 (1-65)||(48650269-48650331)
chr4 (1-62)||(54803341-54803400)
chr4 (1-65)||(51107454-51107516)
chr4 (1-62)||(53662441-53662500)
chr4 (1-64)||(6093620-6093681)
chr4 (1-60)||(38960673-38960730)
chr4 (28-62)||(1868920-1868954)
chr4 (31-65)||(8485573-8485607)
chr4 (28-62)||(31413813-31413847)
chr4 (34-72)||(34027884-34027922)
chr4 (28-61)||(7795025-7795058)
chr4 (35-72)||(9472558-9472595)
chr4 (1-65)||(19910808-19910870)
chr4 (28-61)||(24310548-24310581)
chr4 (28-61)||(36871195-36871228)
chr4 (1-61)||(36947105-36947163)
chr4 (28-61)||(43511685-43511718)
chr4 (31-64)||(48791638-48791671)
chr4 (1-62)||(50890086-50890145)
chr4 (1-62)||(55609178-55609237)
chr4 (282-314)||(53860549-53860581)
chr4 (28-60)||(54848150-54848182)
[»] chr8 (23 HSPs)
chr8 (1-62)||(28156202-28156261)
chr8 (1-61)||(27300346-27300404)
chr8 (1-72)||(22836152-22836221)
chr8 (1-70)||(21649181-21649247)
chr8 (1-62)||(35701840-35701899)
chr8 (1-63)||(5742670-5742730)
chr8 (28-63)||(34578415-34578450)
chr8 (28-62)||(13924021-13924055)
chr8 (28-62)||(22203253-22203287)
chr8 (28-62)||(25430656-25430690)
chr8 (1-62)||(32674245-32674304)
chr8 (1-62)||(34641544-34641603)
chr8 (1-63)||(38675601-38675662)
chr8 (1-62)||(6440080-6440140)
chr8 (1-62)||(28473558-28473617)
chr8 (28-61)||(36675336-36675369)
chr8 (1-65)||(37784387-37784449)
chr8 (28-61)||(41776186-41776219)
chr8 (42-71)||(42443094-42443123)
chr8 (1-70)||(43397772-43397839)
chr8 (1-61)||(12284282-12284341)
chr8 (1-64)||(18549976-18550037)
chr8 (31-63)||(23708974-23709006)
[»] chr7 (27 HSPs)
chr7 (1-58)||(640395-640450)
chr7 (1-62)||(41538481-41538540)
chr7 (1-60)||(17039158-17039215)
chr7 (1-62)||(28548234-28548293)
chr7 (1-58)||(45335865-45335920)
chr7 (1-62)||(48639396-48639455)
chr7 (1-61)||(30538626-30538684)
chr7 (1-61)||(41458913-41458971)
chr7 (1-64)||(41910198-41910259)
chr7 (28-62)||(27704434-27704468)
chr7 (28-62)||(48522155-48522189)
chr7 (1-62)||(5378626-5378685)
chr7 (1-61)||(11789704-11789762)
chr7 (28-61)||(25272602-25272635)
chr7 (28-61)||(27866564-27866597)
chr7 (28-61)||(33465066-33465099)
chr7 (1-61)||(37969931-37969989)
chr7 (28-61)||(40207838-40207871)
chr7 (1-66)||(41018658-41018722)
chr7 (1-61)||(7295450-7295509)
chr7 (28-60)||(23034351-23034383)
chr7 (28-64)||(24380748-24380784)
chr7 (1-61)||(28081795-28081853)
chr7 (28-60)||(34349065-34349097)
chr7 (1-60)||(35212968-35213025)
chr7 (1-61)||(42476558-42476616)
chr7 (31-63)||(49142547-49142579)
[»] chr5 (17 HSPs)
chr5 (1-62)||(20985542-20985601)
chr5 (1-64)||(25585469-25585530)
chr5 (1-62)||(3031833-3031892)
chr5 (1-62)||(39032617-39032676)
chr5 (28-65)||(43153087-43153124)
chr5 (3-62)||(29765829-29765886)
chr5 (28-62)||(12203157-12203191)
chr5 (1-62)||(12891109-12891168)
chr5 (28-62)||(14523002-14523036)
chr5 (28-62)||(18729327-18729361)
chr5 (1-62)||(24329995-24330054)
chr5 (28-62)||(38919862-38919896)
chr5 (28-61)||(38387610-38387643)
chr5 (1-65)||(41192583-41192645)
chr5 (1-60)||(30103464-30103521)
chr5 (1-65)||(33037516-33037578)
chr5 (1-60)||(33893587-33893644)
[»] chr2 (24 HSPs)
chr2 (1-62)||(30339992-30340051)
chr2 (1-60)||(9384376-9384433)
chr2 (1-64)||(44484669-44484730)
chr2 (1-70)||(25094343-25094410)
chr2 (1-61)||(5852474-5852532)
chr2 (1-61)||(6328667-6328725)
chr2 (1-61)||(18749376-18749434)
chr2 (28-64)||(22296156-22296192)
chr2 (1-60)||(34373006-34373063)
chr2 (1-61)||(36376862-36376920)
chr2 (28-67)||(12208436-12208475)
chr2 (28-70)||(44897616-44897659)
chr2 (1-58)||(17999749-17999804)
chr2 (1-62)||(19637228-19637287)
chr2 (1-62)||(19835821-19835880)
chr2 (1-63)||(26387872-26387932)
chr2 (1-62)||(34141441-34141500)
chr2 (1-62)||(40721770-40721829)
chr2 (35-68)||(4319762-4319795)
chr2 (28-61)||(27538943-27538976)
chr2 (1-69)||(28679120-28679186)
chr2 (1-60)||(3366027-3366087)
chr2 (1-64)||(11152712-11152773)
chr2 (7-62)||(27529528-27529581)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-63)||(145059-145119)
[»] chr3 (21 HSPs)
chr3 (1-63)||(7351651-7351711)
chr3 (1-71)||(25559694-25559762)
chr3 (1-62)||(9159049-9159108)
chr3 (1-62)||(50025711-50025770)
chr3 (3-63)||(2280175-2280233)
chr3 (1-61)||(30664503-30664561)
chr3 (1-61)||(47141613-47141671)
chr3 (1-63)||(42888785-42888845)
chr3 (1-62)||(9557935-9557994)
chr3 (28-62)||(29846918-29846952)
chr3 (28-62)||(35368621-35368655)
chr3 (28-61)||(14839083-14839116)
chr3 (1-62)||(16479631-16479690)
chr3 (28-61)||(29057659-29057692)
chr3 (1-61)||(48205045-48205103)
chr3 (1-65)||(19150331-19150394)
chr3 (33-65)||(38957543-38957575)
chr3 (28-60)||(44689793-44689825)
chr3 (28-64)||(48490540-48490576)
chr3 (3-62)||(49761201-49761258)
chr3 (1-61)||(52100261-52100319)
[»] scaffold0286 (1 HSPs)
scaffold0286 (28-62)||(17048-17082)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-58)||(48657-48712)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 3e-99; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 309 - 573
Target Start/End: Complemental strand, 7626183 - 7625927
Alignment:
Q  309 tttacataattcagattatgtaatccaaaatgtcgtaggacgtgcgagaaactaacaaggtaggataaaaaacaatctttaactaataaaaagattacaa 408  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||     
T  7626183 tttacataatttagattatgtaatccgaagtgtcgtaggacgtgcgagaaactaataaagtaggataaaaaacaatctttaattaatagaaagattaca- 7626085  T
Q  409 agttatatagcacaattcaggttctccctcatctttgatttctatatcattttttcaaaattcaaattctgcaatcaatccactcaatctagttttcctc 508  Q
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7626084 -------tagcacaattcagtttcttcctcatctttgatttctatatcattttttcaaaattcaaattctgcaatccatccactcaatctagttttcctc 7625992  T
Q  509 tcgtctcttcatttcttcctctctattttttgctcttcaaatttattgttcttaaagtccctatt 573  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  7625991 tcgtctcttaatttcttcctctctattattttctcttcaaatttattgttcttaaagtccctatt 7625927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 62 - 363
Target Start/End: Complemental strand, 7626479 - 7626184
Alignment:
Q  62 taaacaaaatagataaacgccacaataaaaggatgatcaaggagatccatgtgtttgcaatttcaagaaatttcggtccaataaaattaaagcccatgaa 161  Q
    ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7626479 taaacaaaatagagaaacgccacaataaaaagttgatcaaggagatccatgtgtttgcaatttcaagaaatttcggtccaataaaaataaagcccatgaa 7626380  T
Q  162 aaagttttaaataagacgnnnnnnnnnnnnnnnnnnnnctctcaccctctacgattagaggaggatgttttaaataaaacccatgaaaaaggtattaaat 261  Q
    |||||||||||||||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7626379 aaagttttaaataagac------agtttttttttctttctctcaccctctacgattagaggaggatgttttaaataaaacccatgaaaaaggttttaaat 7626286  T
Q  262 aatcccctgaaatactataggatgttggaggatgtttttaacgtgtttttacataattcagattatgtaatccaaaatgtcgtaggacgtgcgagaaact 361  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || |||||||| | || ||| |||||||||||||||||||    
T  7626285 aatcccctgaaatactatagggtgttggaggatgtttttaacgtgtttctacataattcggactatgtaattcgaagtgttgtaggacgtgcgagaaact 7626186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7304138 - 7304197
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||||| |||  ||||| | |||||||||||||||||| ||||||||    
T  7304138 tatgagagagaaagttgtacaaaaa--ttgtatagaaatcgttgtacaaatattatttctct 7304197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34792080 - 34792018
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaa 65  Q
    |||||||||||| |||||||| || ||  ||||||||||  ||||||||||||||||||||||||    
T  34792080 tatgagagagaaggttgtacaaaagtt--gtacaaaaatgattgtacaaatatcatttctctaaa 34792018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 2165327 - 2165361
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  2165327 ttgtacaaaaatggttgtacaaatatcatttctct 2165361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 2176960 - 2176994
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  2176960 ttgtacaaaaatggttgtacaaatatcatttctct 2176994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6997563 - 6997621
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||| |||| ||||| ||||| |  |||||||| |||||||||||||||||||||    
T  6997563 tatgagagaggaagtagtacaaaaattat--acaaaaatggttgtacaaatatcatttctc 6997621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 9395364 - 9395397
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  9395364 ttgtacaaaaatagttgtacaaatatcatttctc 9395397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 16121196 - 16121163
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  16121196 ttgtacaaaaatggttgtacaaatatcatttctc 16121163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 27790273 - 27790306
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  27790273 ttgtacaaaaatggttgtacaaatatcatttctc 27790306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 22674770 - 22674710
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    ||||||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||    
T  22674770 tatgagagagaaagttgtacaaaaatt--gtacaaaaatagttgtacaaatatcatttctcta 22674710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1100275 - 1100216
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||| ||||||||||||||| |||||  |||||||||| ||||||||||||||||||||||    
T  1100275 tatgatagagaaagttgtacaaaaatt--gtacaaaaatggttgtacaaatatcatttctct 1100216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 8577515 - 8577588
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaacaaaatagata 76  Q
    |||||||||||| |||||||| || || |  |||||||| ||||||||||||||||||||||||| | ||||||||    
T  8577515 tatgagagagaaggttgtacaaaagttat--acaaaaatggttgtacaaatatcatttctctaaaaagaatagata 8577588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 15059698 - 15059642
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcattt 58  Q
    |||||||||||||||||| || ||||||||||  ||||| ||||||||||||||||||    
T  15059698 tatgagagagaaagttgt-caaaaattttgtaataaaatggttgtacaaatatcattt 15059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12990482 - 12990540
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| ||||||| |||| || |||||||||| |||||||||||||||||||||    
T  12990482 tatgagagagaaggttgtac-gaaagtt-gtacaaaaatggttgtacaaatatcatttctc 12990540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 41564918 - 41564953
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    |||||||||||| |||||||||||||||||||||||    
T  41564918 ttgtacaaaaatggttgtacaaatatcatttctcta 41564953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 21854477 - 21854536
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||||| || ||  |||| |||||  |||||||||||||||||||||    
T  21854477 tatgagagagaaagttgtacaaaagtt--gtaccaaaataattgtacaaatatcatttctct 21854536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 30414908 - 30414874
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  30414908 ttgtacaaaaatggttgtacaaatatcatttctct 30414874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 16252786 - 16252819
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  16252786 ttgtacaaaaatggttgtacaaatatcatttctc 16252819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 26760620 - 26760562
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||||||| || |||||||| |||||  |||||||||| ||||||||||||||| |||||    
T  26760620 tatgagagaaaatgttgtacaaaaatt--gtacaaaaatggttgtacaaatatcaattctc 26760562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 31244746 - 31244804
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||| |||||  ||||||||||  || |||||||||||||||||    
T  31244746 tatgagagagaatgttgtacaaaaatt--gtacaaaaatgattatacaaatatcatttctc 31244804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 40118728 - 40118786
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||||||||||| ||||||| ||||| |  ||||||||  ||||||||||||||||||||    
T  40118728 tatgagagagaaaattgtacaaaaattat--acaaaaatgattgtacaaatatcatttctc 40118786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 41425297 - 41425242
Alignment:
Q  4 gagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||||||||||||||| |||| || |||| ||||| |||||||||||||||||||||    
T  41425297 gagagagaaagttgtac-gaaagtt-gtaccaaaatagttgtacaaatatcatttctc 41425242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 649827 - 649768
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||||||||| || |||  ||||| |||||| ||||| |||||||||||||||    
T  649827 tatgagagagaaagttgt-cacaaaagttgtaaaaaaatggttgttcaaatatcatttctc 649768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5574272 - 5574329
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttct 60  Q
    |||||||||||| |||||||| || ||  ||||||||||  |||||||||||||||||||    
T  5574272 tatgagagagaaggttgtacaaaagtt--gtacaaaaatgattgtacaaatatcatttct 5574329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31827009 - 31826946
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaa 65  Q
    |||||||||||||||||| || |||  ||||| |||||| ||||| |||||||| ||||||||||    
T  31827009 tatgagagagaaagttgt-cacaaaaattgtaaaaaaatggttgttcaaatatcctttctctaaa 31826946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 50460739 - 50460771
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttct 60  Q
    |||||||||||| ||||||||||||||||||||    
T  50460739 ttgtacaaaaatggttgtacaaatatcatttct 50460771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4859 - 4919
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    ||||||||||||||||||||| |||||  |||| ||||| |||||||||||||||||||||||    
T  4859 tatgagagagaaagttgtacaaaaatt--gtaccaaaatggttgtacaaatatcatttctcta 4919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4577615 - 4577555
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    ||||||||||||||||||||| |||||  |||| ||||| |||||||||||||||||||||||    
T  4577615 tatgagagagaaagttgtacaaaaatt--gtacgaaaatggttgtacaaatatcatttctcta 4577555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31318811 - 31318751
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    ||||||||||||||||||||| |||||  |||| ||||| |||||||||||||||||||||||    
T  31318811 tatgagagagaaagttgtacaaaaatt--gtaccaaaatggttgtacaaatatcatttctcta 31318751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29577449 - 29577508
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||| ||||||||||||| |||||  |||||||||| ||||||||||||||||||||||    
T  29577449 tatgagaaagaaagttgtacaaaaatt--gtacaaaaatagttgtacaaatatcatttctct 29577508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 1987728 - 1987786
Alignment:
Q  3 tgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    ||||||||||||||||||| |||||  |||| ||||| |||||||||||||||||||||||    
T  1987728 tgagagagaaagttgtacaaaaatt--gtactaaaatggttgtacaaatatcatttctcta 1987786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 36110192 - 36110134
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||| |||||  |||||||||| |||||||||||||||||||||    
T  36110192 tatgagagagaaggttgtacaaaaatt--gtacaaaaatagttgtacaaatatcatttctc 36110134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 48650269 - 48650331
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaa 65  Q
    ||||||||||||||||||||| || ||||  |||||||| |||||||||||| ||||||||||||    
T  48650269 tatgagagagaaagttgtacaaaagtttt--acaaaaatagttgtacaaataacatttctctaaa 48650331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54803341 - 54803400
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||||| |||||  | || ||||| ||||||||||||||||||||||    
T  54803341 tatgagagagaaagttgtacaaaaatt--gcaccaaaatagttgtacaaatatcatttctct 54803400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 51107454 - 51107516
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaa 65  Q
    |||||||||||||||||| || ||||| |  ||||||||  ||||||||||||||||||||||||    
T  51107454 tatgagagagaaagttgtgcaaaaattat--acaaaaatgattgtacaaatatcatttctctaaa 51107516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 53662441 - 53662500
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||||| ||||| | ||||||| | ||||||||||||||||||||||    
T  53662441 tatgagagagaaagttgtacaaaaattgt-tacaaaa-tagttgtacaaatatcatttctct 53662500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6093620 - 6093681
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaa 64  Q
    ||||||||||||||||||||| |||  |||||  ||||| ||| ||||||||||||||||||||    
T  6093620 tatgagagagaaagttgtacaaaaa--ttgtattaaaatggttctacaaatatcatttctctaa 6093681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38960673 - 38960730
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttct 60  Q
    |||||||||||| |||||| | |||||  |||||||||| ||||||||||||||||||||    
T  38960673 tatgagagagaaggttgtataaaaatt--gtacaaaaatggttgtacaaatatcatttct 38960730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 1868920 - 1868954
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  1868920 ttgtacaaaaatggttgtacaaatatcatttctct 1868954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 8485607 - 8485573
Alignment:
Q  31 tacaaaaatcgttgtacaaatatcatttctctaaa 65  Q
    ||||||||| |||||||||||||||||||||||||    
T  8485607 tacaaaaatagttgtacaaatatcatttctctaaa 8485573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 31413813 - 31413847
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  31413813 ttgtacaaaaatagttgtacaaatatcatttctct 31413847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 34027922 - 34027884
Alignment:
Q  34 aaaaatcgttgtacaaatatcatttctctaaacaaaata 72  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  34027922 aaaaattgttgtacaaatatcatttctctaaaaaaaata 34027884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 7795058 - 7795025
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  7795058 ttgtacaaaaatggttgtacaaatatcatttctc 7795025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 9472558 - 9472595
Alignment:
Q  35 aaaatcgttgtacaaatatcatttctctaaacaaaata 72  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  9472558 aaaatagttgtacaaatatcatttctctaaagaaaata 9472595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19910870 - 19910808
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaa 65  Q
    |||||||||||||||||| || |||||  ||| |||||| |||||| | ||||||||||||||||    
T  19910870 tatgagagagaaagttgtccaaaaatt--gtaaaaaaatggttgtaaatatatcatttctctaaa 19910808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 24310548 - 24310581
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  24310548 ttgtacaaaaatggttgtacaaatatcatttctc 24310581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 36871195 - 36871228
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  36871195 ttgtacaaaaatagttgtacaaatatcatttctc 36871228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36947105 - 36947163
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||||||| |||| |||| ||  || ||||| |||||||||||||||||||||    
T  36947105 tatgagagagaaagttatacaaaaatatt--accaaaatagttgtacaaatatcatttctc 36947163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 43511685 - 43511718
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  43511685 ttgtacaaaaatagttgtacaaatatcatttctc 43511718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 48791638 - 48791671
Alignment:
Q  31 tacaaaaatcgttgtacaaatatcatttctctaa 64  Q
    ||||||||| ||||||||||||||||||||||||    
T  48791638 tacaaaaatagttgtacaaatatcatttctctaa 48791671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 50890086 - 50890145
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||||||||| || |||  |||| ||||||| ||||||||||||||||||||||    
T  50890086 tatgagagagaaagttgt-cacaaaagttgt-caaaaatagttgtacaaatatcatttctct 50890145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 55609178 - 55609237
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||||||||| || |||  |||||||||| | ||||||||||||||||||||||    
T  55609178 tatgagagagaaagttgt-cacaaaagttgtacaaaa-tggttgtacaaatatcatttctct 55609237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 53860549 - 53860581
Alignment:
Q  282 gatgttggaggatgtttttaacgtgtttttaca 314  Q
    ||||||| |||||||||||||||||||||||||    
T  53860549 gatgttgaaggatgtttttaacgtgtttttaca 53860581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 54848182 - 54848150
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttct 60  Q
    |||||||||||| ||||||||||||||||||||    
T  54848182 ttgtacaaaaatggttgtacaaatatcatttct 54848150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28156261 - 28156202
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||||| |||||  |||| ||||| ||||||||||||||||||||||    
T  28156261 tatgagagagaaagttgtacaaaaatt--gtaccaaaatggttgtacaaatatcatttctct 28156202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27300404 - 27300346
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||||||||||||||||||| || ||  |||||||||| |||||||||||||||||||||    
T  27300404 tatgagagagaaagttgtacaaaagtt--gtacaaaaatggttgtacaaatatcatttctc 27300346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 22836152 - 22836221
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaacaaaata 72  Q
    ||||||||||||||||||||| ||  ||||||  ||||| |||||||||||||||||||||| | |||||||    
T  22836152 tatgagagagaaagttgtacaaaa--tttgtatgaaaatggttgtacaaatatcatttctcttatcaaaata 22836221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 21649181 - 21649247
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaacaaaa 70  Q
    ||||| ||||||||||||||| || ||  |||||||||| ||||||||||||||||||||| ||||||||    
T  21649181 tatgaaagagaaagttgtacaaaagtt--gtacaaaaatggttgtacaaatatcatttctc-aaacaaaa 21649247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35701840 - 35701899
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| |||||||| || ||  |||||||||| ||||||||||||||||||||||    
T  35701840 tatgagagagaaggttgtacaaaagtt--gtacaaaaatggttgtacaaatatcatttctct 35701899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5742670 - 5742730
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    ||||||||| ||||||||||| || ||  |||| ||||| |||||||||||||||||||||||    
T  5742670 tatgagagataaagttgtacaaaagtt--gtaccaaaatggttgtacaaatatcatttctcta 5742730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 34578415 - 34578450
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    |||||||||||| |||||||||||||||||||||||    
T  34578415 ttgtacaaaaatggttgtacaaatatcatttctcta 34578450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 13924055 - 13924021
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  13924055 ttgtacaaaaatggttgtacaaatatcatttctct 13924021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 22203253 - 22203287
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  22203253 ttgtacaaaaatggttgtacaaatatcatttctct 22203287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 25430690 - 25430656
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  25430690 ttgtacaaaaatggttgtacaaatatcatttctct 25430656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32674245 - 32674304
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||||| || || |  || ||||| ||||||||||||||||||||||    
T  32674245 tatgagagagaaagttgtacaaaagttat--accaaaatggttgtacaaatatcatttctct 32674304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 34641603 - 34641544
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||| ||| ||||| | ||  ||||| ||||||||||||||||||||||    
T  34641603 tatgagagagaaagttgcacaaaaattatata--aaaatggttgtacaaatatcatttctct 34641544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 38675662 - 38675601
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    |||||||||||||||||| || |||  || || |||||| |||||||||||||||||||||||    
T  38675662 tatgagagagaaagttgt-cataaaaattatagaaaaatggttgtacaaatatcatttctcta 38675601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6440140 - 6440080
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||||||||| || |||  ||||| | |||| ||||||||||||||||||||||    
T  6440140 tatgagagagaaagttgt-cacaaaagttgtaaagaaatagttgtacaaatatcatttctct 6440080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28473558 - 28473617
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||||||| | || |||| |||||||||| | ||||||||||||||||||||||    
T  28473558 tatgagagagaaagttat-ca-aaatattgtacaaaagtggttgtacaaatatcatttctct 28473617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 36675369 - 36675336
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  36675369 ttgtacaaaaatggttgtacaaatatcatttctc 36675336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 37784387 - 37784449
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaa 65  Q
    ||||||||||||| ||||||| || || |  || ||||| |||||||||||||||||||||||||    
T  37784387 tatgagagagaaaattgtacaaaagttat--accaaaatggttgtacaaatatcatttctctaaa 37784449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 41776219 - 41776186
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  41776219 ttgtacaaaaatagttgtacaaatatcatttctc 41776186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 42443123 - 42443094
Alignment:
Q  42 ttgtacaaatatcatttctctaaacaaaat 71  Q
    ||||||||||||||||||||||||||||||    
T  42443123 ttgtacaaatatcatttctctaaacaaaat 42443094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 43397839 - 43397772
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaacaaaa 70  Q
    ||||||||||||||||||| | |||  ||||| |||||| ||||| ||||||||||||||| ||||||||    
T  43397839 tatgagagagaaagttgta-acaaaagttgta-aaaaatggttgttcaaatatcatttctcaaaacaaaa 43397772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12284282 - 12284341
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||||||||| || |||  |||| ||||||| ||||| |||||||||||||||    
T  12284282 tatgagagagaaagttgt-cacaaacgttgtccaaaaatggttgttcaaatatcatttctc 12284341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 18550037 - 18549976
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaa 64  Q
    |||||||||||| |||||||| || || |  ||||||||  |||||||||||||||||||||||    
T  18550037 tatgagagagaatgttgtacaaaagttat--acaaaaatgattgtacaaatatcatttctctaa 18549976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 23709006 - 23708974
Alignment:
Q  31 tacaaaaatcgttgtacaaatatcatttctcta 63  Q
    ||||||||| |||||||||||||||||||||||    
T  23709006 tacaaaaatggttgtacaaatatcatttctcta 23708974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 640450 - 640395
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcattt 58  Q
    ||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||||    
T  640450 tatgagagagaaagttgtacaaaaatt--gtacaaaaatggttgtacaaatatcattt 640395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41538540 - 41538481
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| |||||||| |||||  |||||||||| ||||||||||||||||||||||    
T  41538540 tatgagagagaaggttgtacaaaaatt--gtacaaaaatggttgtacaaatatcatttctct 41538481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 17039215 - 17039158
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttct 60  Q
    ||||||||||||||||||||| ||||| |  |||||||| ||||||||||||||||||||    
T  17039215 tatgagagagaaagttgtacaaaaattat--acaaaaatagttgtacaaatatcatttct 17039158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28548234 - 28548293
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||||| || ||  |||| ||||| ||||||||||||||||||||||    
T  28548234 tatgagagagaaagttgtacaaaagtt--gtaccaaaatagttgtacaaatatcatttctct 28548293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 45335920 - 45335865
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcattt 58  Q
    ||||||||||||||||||||| || ||  |||||||||| ||||||||||||||||||    
T  45335920 tatgagagagaaagttgtacaaaagtt--gtacaaaaatggttgtacaaatatcattt 45335865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48639396 - 48639455
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| |||||||| || ||  |||||||||| ||||||||||||||||||||||    
T  48639396 tatgagagagaaggttgtacaaaagtt--gtacaaaaatggttgtacaaatatcatttctct 48639455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30538684 - 30538626
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||||||||||||||||||| || ||  |||| ||||| |||||||||||||||||||||    
T  30538684 tatgagagagaaagttgtacaaaagtt--gtaccaaaattgttgtacaaatatcatttctc 30538626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 41458913 - 41458971
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||||||||||||||||||| |||  |||||| ||||| ||||||||||||| |||||||    
T  41458913 tatgagagagaaagttgtacaaaaa--ttgtactaaaatggttgtacaaatattatttctc 41458971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 41910198 - 41910259
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaa 64  Q
    |||||||||||| |||||||| || ||  |||||||||| ||||||||||||||||| ||||||    
T  41910198 tatgagagagaaggttgtacaaaagtt--gtacaaaaatggttgtacaaatatcattactctaa 41910259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 27704468 - 27704434
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  27704468 ttgtacaaaaatagttgtacaaatatcatttctct 27704434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 48522189 - 48522155
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  48522189 ttgtacaaaaatggttgtacaaatatcatttctct 48522155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5378685 - 5378626
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||||||||| || ||| || ||| |||||| ||||||||||||||||||||||    
T  5378685 tatgagagagaaagttgt-caaaaagtt-gtataaaaatggttgtacaaatatcatttctct 5378626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11789704 - 11789762
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||||||| ||||||||||| || ||  |||| ||||| |||||||||||||||||||||    
T  11789704 tatgagagacaaagttgtacaaaagtt--gtactaaaatggttgtacaaatatcatttctc 11789762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 25272635 - 25272602
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  25272635 ttgtacaaaaatggttgtacaaatatcatttctc 25272602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 27866564 - 27866597
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  27866564 ttgtacaaaaatggttgtacaaatatcatttctc 27866597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 33465066 - 33465099
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  33465066 ttgtacaaaaatggttgtacaaatatcatttctc 33465099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 37969989 - 37969931
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||||||||||||||||||| || ||  |||  ||||| |||||||||||||||||||||    
T  37969989 tatgagagagaaagttgtacaaaagtt--gtatcaaaatagttgtacaaatatcatttctc 37969931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 40207838 - 40207871
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  40207838 ttgtacaaaaatagttgtacaaatatcatttctc 40207871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41018722 - 41018658
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaac 66  Q
    ||||||| |||||||||| || |||  |||| ||||||| ||||| ||||||||||||||||||||    
T  41018722 tatgagatagaaagttgt-cacaaaagttgtccaaaaatagttgttcaaatatcatttctctaaac 41018658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7295509 - 7295450
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||||||||| |  ||| || |||| ||||| |||||||||||||||||||||    
T  7295509 tatgagagagaaagttgttccaaaaatt-gtactaaaatggttgtacaaatatcatttctc 7295450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 23034351 - 23034383
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttct 60  Q
    |||||||||||| ||||||||||||||||||||    
T  23034351 ttgtacaaaaatggttgtacaaatatcatttct 23034383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 24380748 - 24380784
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctctaa 64  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  24380748 ttgtataaaaatggttgtacaaatatcatttctctaa 24380784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 28081795 - 28081853
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||||||||||||||||| | ||||| | ||||||| | |||||||||||||||||||||    
T  28081795 tatgagagagaaagttgtaaaaaaattat-tacaaaa-tggttgtacaaatatcatttctc 28081853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 34349065 - 34349097
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttct 60  Q
    |||||||||||| ||||||||||||||||||||    
T  34349065 ttgtacaaaaatggttgtacaaatatcatttct 34349097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35212968 - 35213025
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttct 60  Q
    ||||||||||||||||||||| |||  |||||  |||||  |||||||||||||||||||    
T  35212968 tatgagagagaaagttgtacaaaaa--ttgtagcaaaataattgtacaaatatcatttct 35213025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 42476558 - 42476616
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||||||||| || ||||| | || |||||| |||||||||||||||||||||    
T  42476558 tatgagagagaaagttgtccaaaaattgt-tagaaaaat-gttgtacaaatatcatttctc 42476616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 49142547 - 49142579
Alignment:
Q  31 tacaaaaatcgttgtacaaatatcatttctcta 63  Q
    ||||||||| |||||||||||||||||||||||    
T  49142547 tacaaaaatggttgtacaaatatcatttctcta 49142579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 20985542 - 20985601
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||    
T  20985542 tatgagagagaaagttgtacaaaaattat--acaaaaatggttgtacaaatatcatttctct 20985601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 25585469 - 25585530
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaa 64  Q
    ||||||||||||| ||||||| || ||  |||||||||| ||||||||||||||||||||||||    
T  25585469 tatgagagagaaatttgtacaaaagtt--gtacaaaaatggttgtacaaatatcatttctctaa 25585530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 3031892 - 3031833
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||| ||||||||||||||| || ||  |||||||||| ||||||||||||||||||||||    
T  3031892 tatgaaagagaaagttgtacaaaagtt--gtacaaaaatggttgtacaaatatcatttctct 3031833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39032617 - 39032676
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| |||||||| || ||  |||||||||| ||||||||||||||||||||||    
T  39032617 tatgagagagaaggttgtacaaaagtt--gtacaaaaatggttgtacaaatatcatttctct 39032676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 43153087 - 43153124
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctctaaa 65  Q
    |||||||||||| |||||||||||||||||||||||||    
T  43153087 ttgtacaaaaattgttgtacaaatatcatttctctaaa 43153124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 29765886 - 29765829
Alignment:
Q  3 tgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||| || ||  |||| ||||| ||||||||||||||||||||||    
T  29765886 tgagagagaaagttgtacaaaagtt--gtactaaaatggttgtacaaatatcatttctct 29765829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 12203191 - 12203157
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  12203191 ttgtacaaaaatggttgtacaaatatcatttctct 12203157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12891109 - 12891168
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| |||||||| || || ||  ||||||| ||||||||||||||||||||||    
T  12891109 tatgagagagaatgttgtacaaaagttgtg--caaaaatggttgtacaaatatcatttctct 12891168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 14523002 - 14523036
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  14523002 ttgtacaaaaatggttgtacaaatatcatttctct 14523036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 18729327 - 18729361
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  18729327 ttgtacaaaaatggttgtacaaatatcatttctct 18729361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24329995 - 24330054
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||||| || ||  |||| |||||  |||||||||||||||||||||    
T  24329995 tatgagagagaaagttgtacaaaagtt--gtaccaaaataattgtacaaatatcatttctct 24330054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 38919896 - 38919862
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  38919896 ttgtacaaaaatagttgtacaaatatcatttctct 38919862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 38387643 - 38387610
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  38387643 ttgtacaaaaatggttgtacaaatatcatttctc 38387610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 41192645 - 41192583
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaa 65  Q
    ||||||||||||||||||  | |||||  |||  ||||| |||||||||||||||||||||||||    
T  41192645 tatgagagagaaagttgtcaaaaaatt--gtagcaaaatagttgtacaaatatcatttctctaaa 41192583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 30103464 - 30103521
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttct 60  Q
    ||||||||||||| ||||||| ||||| |  ||||||||  |||||||||||||||||||    
T  30103464 tatgagagagaaaattgtacaaaaattat--acaaaaatgattgtacaaatatcatttct 30103521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33037578 - 33037516
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaa 65  Q
    |||||||||||||||||| || |||  ||||| |||||| ||||| |||||||||||||||||||    
T  33037578 tatgagagagaaagttgt-cataaaagttgta-aaaaatggttgttcaaatatcatttctctaaa 33037516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33893644 - 33893587
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttct 60  Q
    |||||||||||||||| ||||||| ||  |||||||||| ||| ||||||||| ||||||    
T  33893644 tatgagagagaaagttatacagaagtt--gtacaaaaatagttatacaaatattatttct 33893587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30340051 - 30339992
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||||| || ||  |||||||||| ||||||||||||||||||||||    
T  30340051 tatgagagagaaagttgtacaaaagtt--gtacaaaaatggttgtacaaatatcatttctct 30339992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9384433 - 9384376
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttct 60  Q
    ||||||||||||||||||||| ||||| |||  |||||| ||||||||||||||||||||    
T  9384433 tatgagagagaaagttgtacaaaaattatgt--aaaaatagttgtacaaatatcatttct 9384376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44484669 - 44484730
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaa 64  Q
    ||||||||||||||||||||| ||||| | ||||||| | ||||||||||||||||||||||||    
T  44484669 tatgagagagaaagttgtacaaaaattgt-tacaaaa-tggttgtacaaatatcatttctctaa 44484730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 25094410 - 25094343
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaacaaaa 70  Q
    ||||||||||||||||||||| |||||  |||| ||||| ||| ||||||||||||||||| ||| ||||    
T  25094410 tatgagagagaaagttgtacaaaaatt--gtaccaaaatggttatacaaatatcatttctcaaaagaaaa 25094343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5852532 - 5852474
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||| || ||  |||||||||| |||||||||||||||||||||    
T  5852532 tatgagagagaaggttgtacaaaagtt--gtacaaaaatggttgtacaaatatcatttctc 5852474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 6328725 - 6328667
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||||||||||||||||||| ||||| |  || ||||| |||||||||||||||||||||    
T  6328725 tatgagagagaaagttgtacaaaaattat--accaaaatggttgtacaaatatcatttctc 6328667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18749376 - 18749434
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||| ||||| |  |||||||| |||||||||||||||||||||    
T  18749376 tatgagagagaaggttgtacaaaaattat--acaaaaatggttgtacaaatatcatttctc 18749434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 22296156 - 22296192
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctctaa 64  Q
    |||||||||||| ||||||||||||||||||||||||    
T  22296156 ttgtacaaaaatggttgtacaaatatcatttctctaa 22296192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34373063 - 34373006
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttct 60  Q
    ||||||||||||||||||||| |||  || ||| ||||| ||||||||||||||||||||    
T  34373063 tatgagagagaaagttgtacaaaaa--ttataccaaaatggttgtacaaatatcatttct 34373006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36376862 - 36376920
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||||||||| || |||| |||||||||| | |||||||||||||||||||||    
T  36376862 tatgagagagaaagttgt-ca-aaatgttgtacaaaagtggttgtacaaatatcatttctc 36376920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 12208475 - 12208436
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctctaaaca 67  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  12208475 ttgtacaaaaatggttgtacaaatatcatttctcttaaca 12208436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 44897659 - 44897616
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc-taaacaaaa 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  44897659 ttgtacaaaaatggttgtacaaatatcatttctcataaacaaaa 44897616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 17999804 - 17999749
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcattt 58  Q
    ||||||||||||||||||||| || ||  ||||| |||| ||||||||||||||||||    
T  17999804 tatgagagagaaagttgtacaaaagtt--gtacacaaatggttgtacaaatatcattt 17999749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19637287 - 19637228
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||| ||||||||||||||| || || |  |||||||| ||||||||||||||||||||||    
T  19637287 tatgaaagagaaagttgtacaaaagttat--acaaaaatggttgtacaaatatcatttctct 19637228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19835880 - 19835821
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||| ||||||||||||||| || || |  |||||||| ||||||||||||||||||||||    
T  19835880 tatgaaagagaaagttgtacaaaagttat--acaaaaatggttgtacaaatatcatttctct 19835821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 26387872 - 26387932
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    |||||||||||| ||||||| |||| || |||||| ||| |||||||||||||||||||||||    
T  26387872 tatgagagagaaggttgtac-gaaagtt-gtacaagaatggttgtacaaatatcatttctcta 26387932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 34141500 - 34141441
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| |||||||| || ||  ||||||||||  |||||||||||||||||||||    
T  34141500 tatgagagagaaggttgtacaaaagtt--gtacaaaaatgattgtacaaatatcatttctct 34141441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40721829 - 40721770
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||||| || ||  |||| ||||| | ||||||||||||||||||||    
T  40721829 tatgagagagaaagttgtacaaaagtt--gtaccaaaatggctgtacaaatatcatttctct 40721770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 4319795 - 4319762
Alignment:
Q  35 aaaatcgttgtacaaatatcatttctctaaacaa 68  Q
    ||||| ||||||||||||||||||||||||||||    
T  4319795 aaaatagttgtacaaatatcatttctctaaacaa 4319762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 27538943 - 27538976
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  27538943 ttgtacaaaaatggttgtacaaatatcatttctc 27538976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 28679186 - 28679120
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaacaaa 69  Q
    |||||||||||| |||||||| || ||  ||||||||||  ||||||||||||||||| |||| |||||    
T  28679186 tatgagagagaatgttgtacaaaagtt--gtacaaaaatgattgtacaaatatcatttatctatacaaa 28679120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3366087 - 3366027
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttg-tacaaaaatcgttgtacaaatatcatttct 60  Q
    ||||||| ||||| ||||||| ||||| |  ||||||||| ||||||||||||||||||||    
T  3366087 tatgagaaagaaaattgtacaaaaattatactacaaaaatggttgtacaaatatcatttct 3366027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 11152712 - 11152773
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaa 64  Q
    |||||||||||| |||||||| ||||| | ||  |||||  |||||||||||||||||||||||    
T  11152712 tatgagagagaaggttgtacaaaaattatata--aaaatgattgtacaaatatcatttctctaa 11152773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 27529581 - 27529528
Alignment:
Q  7 agagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||| || ||  |||||||||| ||| ||||||||||||||||||    
T  27529581 agagaaagttgtacaaaagtt--gtacaaaaatggttctacaaatatcatttctct 27529528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 145119 - 145059
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    |||||||||||| |||||||| || ||  |||||||||| |||||||||||||||||||||||    
T  145119 tatgagagagaatgttgtacaaaagtt--gtacaaaaatggttgtacaaatatcatttctcta 145059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7351651 - 7351711
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    ||||||||||||| ||||||| ||||| |  |||||||| |||||||||||||||||||||||    
T  7351651 tatgagagagaaaattgtacaaaaattat--acaaaaatggttgtacaaatatcatttctcta 7351711  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 25559762 - 25559694
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaacaaaat 71  Q
    ||||||||||||||||||| | ||||| |  || ||||| ||||||||||||||||||||| |||||||||    
T  25559762 tatgagagagaaagttgtataaaaattat--accaaaatggttgtacaaatatcatttctcaaaacaaaat 25559694  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9159049 - 9159108
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||| ||||||| ||||||| |||||  |||||||||| ||||||||||||||||||||||    
T  9159049 tatgaaagagaaaattgtacaaaaatt--gtacaaaaatggttgtacaaatatcatttctct 9159108  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 50025711 - 50025770
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||||| ||  ||| ||| ||||| ||||||||||||||||||||||    
T  50025711 tatgagagagaaagttgtacaaaa--tttataccaaaatggttgtacaaatatcatttctct 50025770  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 2280233 - 2280175
Alignment:
Q  3 tgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    ||||||||||||||||||| || ||  |||| ||||| |||||||||||||||||||||||    
T  2280233 tgagagagaaagttgtacaaaagtt--gtactaaaatggttgtacaaatatcatttctcta 2280175  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30664561 - 30664503
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||||||||||||||||||| || ||  ||||||||||  ||||||||||||||||||||    
T  30664561 tatgagagagaaagttgtacaaaagtt--gtacaaaaatgattgtacaaatatcatttctc 30664503  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 47141613 - 47141671
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||||||||||||||||||| |||  || ||| ||||| |||||||||||||||||||||    
T  47141613 tatgagagagaaagttgtacaaaaa--ttataccaaaatggttgtacaaatatcatttctc 47141671  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42888785 - 42888845
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctcta 63  Q
    ||||||||||||| ||||||| || ||  |||||||||| | |||||||||||||||||||||    
T  42888785 tatgagagagaaaattgtacaaaagtt--gtacaaaaatggctgtacaaatatcatttctcta 42888845  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9557935 - 9557994
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||||| |||  |||||  ||||| |||||| |||||||||||||||    
T  9557935 tatgagagagaaagttgtacaaaaa--ttgtatcaaaattgttgtataaatatcatttctct 9557994  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 29846918 - 29846952
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  29846918 ttgtacaaaaatggttgtacaaatatcatttctct 29846952  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 35368655 - 35368621
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  35368655 ttgtacaaaaatagttgtacaaatatcatttctct 35368621  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 14839083 - 14839116
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  14839083 ttgtacaaaaatggttgtacaaatatcatttctc 14839116  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16479690 - 16479631
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||||||||| || |||  |||||||||| | ||||||||||||||||||||||    
T  16479690 tatgagagagaaagttgt-cacaaaagttgtacaaaa-tggttgtacaaatatcatttctct 16479631  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 29057692 - 29057659
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    |||||||||||| |||||||||||||||||||||    
T  29057692 ttgtacaaaaatggttgtacaaatatcatttctc 29057659  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 48205103 - 48205045
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||||||||||| ||||||| ||||| |  ||||||||  ||||||||||||||||||||    
T  48205103 tatgagagagaaaattgtacaaaaattat--acaaaaatgattgtacaaatatcatttctc 48205045  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19150331 - 19150394
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctctaaa 65  Q
    |||||||||||||||||| || |||  ||||  ||||||  ||||||||||||||||||||||||    
T  19150331 tatgagagagaaagttgt-cacaaaagttgttaaaaaatgattgtacaaatatcatttctctaaa 19150394  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 38957543 - 38957575
Alignment:
Q  33 caaaaatcgttgtacaaatatcatttctctaaa 65  Q
    ||||||| |||||||||||||||||||||||||    
T  38957543 caaaaatagttgtacaaatatcatttctctaaa 38957575  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 44689825 - 44689793
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttct 60  Q
    |||||||||||| ||||||||||||||||||||    
T  44689825 ttgtacaaaaatggttgtacaaatatcatttct 44689793  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 48490540 - 48490576
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctctaa 64  Q
    |||||||||| | ||||||||||||||||||||||||    
T  48490540 ttgtacaaaagtggttgtacaaatatcatttctctaa 48490576  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 49761201 - 49761258
Alignment:
Q  3 tgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    ||||||||||||||||||| |||||  ||   ||||| ||||||||||||||||||||||    
T  49761201 tgagagagaaagttgtacaaaaatt--gttagaaaatggttgtacaaatatcatttctct 49761258  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 52100319 - 52100261
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcatttctc 61  Q
    ||||| ||||||||||||||| ||||| | || |||||| |||||||||||||||||||||    
T  52100319 tatgaaagagaaagttgtacaaaaattat-ta-aaaaatggttgtacaaatatcatttctc 52100261  T

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Target: scaffold0286 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 17082 - 17048
Alignment:
Q  28 ttgtacaaaaatcgttgtacaaatatcatttctct 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  17082 ttgtacaaaaatggttgtacaaatatcatttctct 17048  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 48712 - 48657
Alignment:
Q  1 tatgagagagaaagttgtacagaaattttgtacaaaaatcgttgtacaaatatcattt 58  Q
    |||||||||||| |||||||| |||||  ||||||||||  |||||||||||||||||    
T  48712 tatgagagagaaggttgtacaaaaatt--gtacaaaaatgattgtacaaatatcattt 48657  T

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