View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15589_low_11 (Length: 586)
Name: NF15589_low_11
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Original strand, 21703722 - 21704286
Alignment:
| Q |
18 |
cgataaggttatcttaatcacagtgtctcaaactccaaacgttggaaaaattcaagaaaaaatggcagctttgttaaacttgaaactcagtgaagaagag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21703722 |
cgataaggttatcttaatcacagtgtctcaaactccaaacgttagaaaaattcaaggaaaaatggcagctttgttaaacttgaaactcagtgaagaagat |
21703821 |
T |
|
| Q |
118 |
gaagacgaaagagcacaacggttgtggttgagtctgaaagnnnnnnnn-cgaattcttgtcatagtagacgatttgtggaaaaagtttaatttgacgagt |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21703822 |
gaagacgaaagagcacaacgtttgtggttgagtctgaaagaaaaaaaaacgaattcttgtcatagtagacgatttgtggaaaaagtttaatctgacgagt |
21703921 |
T |
|
| Q |
217 |
atagggattcgcatagacagtgttaacaagggagcatggaaaatccttgtaaccactcgtaatcggcaagtatgcacttcaatgaactgtcaaaaaatga |
316 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21703922 |
atagggattcgcatagatagtgttaataagggagcatggaaaatccttgtaaccactcgtaatcggcaagtatgcacttcaatgaactgtcaaaaaatta |
21704021 |
T |
|
| Q |
317 |
ttaatctggggctcttatctgaaaatgaatcttggactttgttccaaaagcatgcagatattactgatgaattctctaaatcattgggtggtgtgccaca |
416 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21704022 |
ttaatctggggctcttatctgaaaacgaatcttggactttgttccaaaagcatgcagatattactgatgaattctctaaatcattgggtggtgtgccaca |
21704121 |
T |
|
| Q |
417 |
tgaactctgcaataaatgtaaaggactgcctctagcaattgtaactgtggcgtcttccttaaaagggaaacacaaaagtgagtgggatgttgcactatat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21704122 |
tgaactctgcaataaatgtaaaggactgcctctagcaattgtaactgtggcgtcttccttaaaagggaaacacaaaagtgagtgggatgttgcactatat |
21704221 |
T |
|
| Q |
517 |
aagttgaggaattcagcggaattcgatgatcacgatgaaggagtgagagatgctttaagttgtct |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21704222 |
aagttgaggaattcagcggaattcgatgatcacgatgaaggagtgagagatgctttaagttgtct |
21704286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 34 - 581
Target Start/End: Complemental strand, 21715777 - 21715230
Alignment:
| Q |
34 |
atcacagtgtctcaaactccaaacgttggaaaaattcaagaaaaaatggcagctttgttaaacttgaaactcagtgaagaagaggaagacgaaagagcac |
133 |
Q |
| |
|
||||||||||||||||||| ||| || || | ||||||| ||||||||||| |||||||||||||||||| |||||| ||||| | |||||||| |
|
|
| T |
21715777 |
atcacagtgtctcaaactcaaaatattagagacattcaaggaaaaatggcagacatgttaaacttgaaactcaaggaagaaagcgaagagggaagagcac |
21715678 |
T |
|
| Q |
134 |
aacggttgtggttgagtctgaaagnnnnnnnncgaattcttgtcatagtagacgatttgtggaaaaagtttaatttgacgagtatagggattcgcataga |
233 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| ||| | || ||||| |||||| |||||||||||| || ||||||||||| |||||| |
|
|
| T |
21715677 |
aacggttgtggttgagtttgaaagaaaataaacgaattcttgttataattgatgatttatggaaagagtttaatttgatgaatatagggattcacataga |
21715578 |
T |
|
| Q |
234 |
cagtgttaacaagggagcatggaaaatccttgtaaccactcgtaatcggcaagtatgcacttcaatgaactgtcaaaaaatgattaatctggggctctta |
333 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| | ||| | |||| ||||||| |
|
|
| T |
21715577 |
caatgttaacaagggcgcatggaaaatccttgtaaccactcgtaatcagcaagtatgcactttaatggactgtcaaaagaatattcacctggcgctctta |
21715478 |
T |
|
| Q |
334 |
tctgaaaatgaatcttggactttgttccaaaagcatgcagatattactgatgaattctctaaatcattgggtggtgtgccacatgaactctgcaataaat |
433 |
Q |
| |
|
||| || ||||||| |||||||||||||||||||||||| | |||||||| | || || || ||| ||| ||||||||||| ||||||||| |||||| |
|
|
| T |
21715477 |
tctaaagatgaatcctggactttgttccaaaagcatgcaaagattactgacaagttttccaagtcaatggatggtgtgccacgagaactctgcgataaat |
21715378 |
T |
|
| Q |
434 |
gtaaaggactgcctctagcaattgtaactgtggcgtcttccttaaaagggaaacacaaaagtgagtgggatgttgcactatataagttgaggaattcagc |
533 |
Q |
| |
|
|||| |||||||| ||||| ||||||||| ||||||||| ||||||||| || || |||||||||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
21715377 |
gtaagggactgcccctagctattgtaactatggcgtcttgcttaaaaggaaagcataaaagtgagtgggatgttgcactacataagatgaggaattcatc |
21715278 |
T |
|
| Q |
534 |
ggaattcgatgatcacgatgaaggagtgagagatgctttaagttgtct |
581 |
Q |
| |
|
| ||| |||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
21715277 |
agcatttgatgatcacgatgaaggagtgagaaatgctttgagttgtct |
21715230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 252 - 581
Target Start/End: Original strand, 21622456 - 21622785
Alignment:
| Q |
252 |
atggaaaatccttgtaaccactcgtaatcggcaagtatgcacttcaatgaactgtcaaaaaatgattaatctggggctcttatctgaaaatgaatcttgg |
351 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||| |||| | ||| |||||| || ||||||| ||| |
|
|
| T |
21622456 |
atggaatatccttgtaaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagatgaatcctgg |
21622555 |
T |
|
| Q |
352 |
actttgttccaaaagcatgcagatattactgatgaattctctaaatcattgggtggtgtgccacatgaactctgcaataaatgtaaaggactgcctctag |
451 |
Q |
| |
|
||||||||||||||||||||| | |||||||| | || || || ||| ||| |||| |||||| ||||||||| |||||||||| |||||| | |||| |
|
|
| T |
21622556 |
actttgttccaaaagcatgcaaagattactgacaagttttccaagtcaatggatggtttgccacgagaactctgcgataaatgtaagggactggccctag |
21622655 |
T |
|
| Q |
452 |
caattgtaactgtggcgtcttccttaaaagggaaacacaaaagtgagtgggatgttgcactatataagttgaggaattcagcggaattcgatgatcacga |
551 |
Q |
| |
|
| ||||||||| ||||||||| ||||||||| || || |||||||||||||||||||||||| ||||| ||||||||||| ||| ||| ||||||||||| |
|
|
| T |
21622656 |
ctattgtaactatggcgtcttgcttaaaaggaaagcataaaagtgagtgggatgttgcactacataagatgaggaattcatcggcatttgatgatcacga |
21622755 |
T |
|
| Q |
552 |
tgaaggagtgagagatgctttaagttgtct |
581 |
Q |
| |
|
|||||||||||| ||||||| |||||||| |
|
|
| T |
21622756 |
cgaaggagtgagaaatgctttgagttgtct |
21622785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 252 - 581
Target Start/End: Original strand, 21644170 - 21644499
Alignment:
| Q |
252 |
atggaaaatccttgtaaccactcgtaatcggcaagtatgcacttcaatgaactgtcaaaaaatgattaatctggggctcttatctgaaaatgaatcttgg |
351 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||| |||| | ||| |||||| || ||||||| ||| |
|
|
| T |
21644170 |
atggaatatccttgtaaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagatgaatcctgg |
21644269 |
T |
|
| Q |
352 |
actttgttccaaaagcatgcagatattactgatgaattctctaaatcattgggtggtgtgccacatgaactctgcaataaatgtaaaggactgcctctag |
451 |
Q |
| |
|
||||||||||||||||||||| | |||||||| | || || || ||| ||| |||| |||||| ||||||||| |||||||||| |||||| | |||| |
|
|
| T |
21644270 |
actttgttccaaaagcatgcaaagattactgacaagttttccaagtcaatggatggtttgccacgagaactctgcgataaatgtaagggactggccctag |
21644369 |
T |
|
| Q |
452 |
caattgtaactgtggcgtcttccttaaaagggaaacacaaaagtgagtgggatgttgcactatataagttgaggaattcagcggaattcgatgatcacga |
551 |
Q |
| |
|
| ||||||||| ||||||||| ||||||||| || || |||||||||||||||||||||||| ||||| ||||||||||| ||| ||| ||||||||||| |
|
|
| T |
21644370 |
ctattgtaactatggcgtcttgcttaaaaggaaagcataaaagtgagtgggatgttgcactacataagatgaggaattcatcggcatttgatgatcacga |
21644469 |
T |
|
| Q |
552 |
tgaaggagtgagagatgctttaagttgtct |
581 |
Q |
| |
|
|||||||||||| ||||||| |||||||| |
|
|
| T |
21644470 |
cgaaggagtgagaaatgctttgagttgtct |
21644499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 443
Target Start/End: Original strand, 21115318 - 21115595
Alignment:
| Q |
166 |
cgaattcttgtcatagtagacgatttgtggaaaaagtttaatttgacgagtatagggattcgcatagacagtgttaacaagggagcatggaaaatccttg |
265 |
Q |
| |
|
||||||||| | ||||| |||||| | |||| | ||||| |||||| | ||||||||||| | |||||| ||||||| || ||||||| |||| |
|
|
| T |
21115318 |
cgaattcttataatagtggacgatctatggagagagtttcatttgataaatatagggattctcgtagacaatgttaacgagcacacatggaaggtcctga |
21115417 |
T |
|
| Q |
266 |
taaccactcgtaatcggcaagtatgcacttcaatgaactgtcaaaaaatgattaatctggggctcttatctgaaaatgaatcttggactttgttccaaaa |
365 |
Q |
| |
|
|||||||||||||| ||| || || || |||||| |||||||||| | |||| || |||||||||| |||||| ||||||||||||| || |||||||| |
|
|
| T |
21115418 |
taaccactcgtaatgagcatgtctgtacatcaatggactgtcaaaagaagattcatttggggctcttgtctgaagatgaatcttggacattattccaaaa |
21115517 |
T |
|
| Q |
366 |
gcatgcagatattactgatgaattctctaaatcattgggtggtgtgccacatgaactctgcaataaatgtaaaggact |
443 |
Q |
| |
|
| |||| ||| ||| |||| ||| || | ||||| ||||||||||| ||| |||||||| | ||||| ||||| |
|
|
| T |
21115518 |
gtttgcaagaattgatgacgaatactccaagttattggatggtgtgccacgggaagtctgcaatgagtgtaatggact |
21115595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 21644012 - 21644175
Alignment:
| Q |
34 |
atcacagtgtctcaaactccaaacgttggaaaaattcaagaaaaaatggcagctttgttaaacttgaaactcagtgaagaagaggaagacgaaagagcac |
133 |
Q |
| |
|
||||||| ||||||||||| ||| || || | ||||| | ||||||||||| |||||||||||||||||| ||||||| ||||| | |||||||| |
|
|
| T |
21644012 |
atcacagcgtctcaaactcaaaatattagagacattcatggaaaaatggcagacatgttaaacttgaaactcaatgaagaaagcgaagagggaagagcac |
21644111 |
T |
|
| Q |
134 |
aacggttgtggttgagtctgaaagnnnnnnnncgaattcttgtcatagtagacgatttgtggaa |
197 |
Q |
| |
|
||||||||||||||||| ||| || ||||||||||| |||||||| ||||| ||||| |
|
|
| T |
21644112 |
aacggttgtggttgagtttgacagaaaataaacgaattcttgttatagtagatgatttatggaa |
21644175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 514 - 581
Target Start/End: Original strand, 21596735 - 21596802
Alignment:
| Q |
514 |
tataagttgaggaattcagcggaattcgatgatcacgatgaaggagtgagagatgctttaagttgtct |
581 |
Q |
| |
|
|||||| ||||||||||| ||| ||| |||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
21596735 |
tataagatgaggaattcatcggcatttgatgatcacgatgaaggagtgagaaatgctttgagttgtct |
21596802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 21622298 - 21622461
Alignment:
| Q |
34 |
atcacagtgtctcaaactccaaacgttggaaaaattcaagaaaaaatggcagctttgttaaacttgaaactcagtgaagaagaggaagacgaaagagcac |
133 |
Q |
| |
|
||||||| ||||||||||| ||| || || | ||||| | |||||||| || |||||||||||||||||| ||||||| ||||| | |||||||| |
|
|
| T |
21622298 |
atcacagcgtctcaaactcaaaatattagagatattcatggaaaaatggtagacatgttaaacttgaaactcaatgaagaaagcgaagagggaagagcac |
21622397 |
T |
|
| Q |
134 |
aacggttgtggttgagtctgaaagnnnnnnnncgaattcttgtcatagtagacgatttgtggaa |
197 |
Q |
| |
|
||||||| ||||||||| ||| || ||||||||||| |||||||| ||||| ||||| |
|
|
| T |
21622398 |
aacggttatggttgagtttgacagaaaataaacgaattcttgttatagtagatgatttatggaa |
21622461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 482
Target Start/End: Original strand, 21122829 - 21123061
Alignment:
| Q |
250 |
gcatggaaaatccttgtaaccactcgtaatcggcaagtatgcacttcaatgaactgtcaaaaaatgattaatctggggctcttatctgaaaatgaatctt |
349 |
Q |
| |
|
|||| |||||||||||||||||| |||| | | | || || | || |||||| ||||| || |||||| || |||||||||| || || ||||||| | |
|
|
| T |
21122829 |
gcattgaaaatccttgtaaccacacgtattgagaatgtttgtattttaatgaattgtcacaagatgattcatttggggctcttgtccaaagatgaatcct |
21122928 |
T |
|
| Q |
350 |
ggactttgttccaaaagcatgcagatattactgatgaattctctaaatcattgggtggtgtgccacatgaactctgcaataaatgtaaaggactgcctct |
449 |
Q |
| |
|
|||| || |||||||||| ||||| ||| ||| ||||||||| ||||| | |||||| ||||| ||| ||||| || |||| || ||||| || | |
|
|
| T |
21122929 |
ggacattcttccaaaagcttgcagtaattgatgacgaattctctgtgtcattagatggtgtaccacaagaaatctgctatgaatgcaagggacttccctt |
21123028 |
T |
|
| Q |
450 |
agcaattgtaactgtggcgtcttccttaaaagg |
482 |
Q |
| |
|
|||||| |||| || | |||||||||||||| |
|
|
| T |
21123029 |
agcaatcaaaactatgtcttcttccttaaaagg |
21123061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 126 - 456
Target Start/End: Complemental strand, 23010587 - 23010257
Alignment:
| Q |
126 |
aagagcacaacggttgtggttgagtctgaaagnnnnnnnncgaattcttgtcatagtagacgatttgtggaaaaagtttaatttga-cgagtatagggat |
224 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| || ||||| || |||||||| ||||| |||| | ||||| |||||| ||| | ||||||| |
|
|
| T |
23010587 |
aagagcacaacgtttgtggttgagtttgaaagaaaagaagcggattctcgtaatagtagatgatttatggagagagtttgatttgaacga-tgtagggat |
23010489 |
T |
|
| Q |
225 |
tcgcatagacagtgttaacaagggagcatggaaaatccttgtaaccactcgtaatcggcaagtatgcacttcaatgaactgtcaaaaaatgattaatctg |
324 |
Q |
| |
|
|||| |||||| || ||||||||| |||||||| ||||||| |||||||||||||| || ||||| | ||| |||||||||| | |||| |||| |
|
|
| T |
23010488 |
tcgcttagacaatgataacaagggtgcatggaagatccttgcaaccactcgtaatcaacatgtatgtgatctgatgcactgtcaaaagaagattcatcta |
23010389 |
T |
|
| Q |
325 |
gggctcttatctgaaaatgaatcttggactttgttccaaaagcatgcagatattactgatgaattctctaaatcattgggtggtgtgccacatgaactct |
424 |
Q |
| |
|
|| |||||| |||| |||| |||||| ||||||||| ||| |||||| ||||| ||| | ||| | || ||||| | |||||||||||| || | | |
|
|
| T |
23010388 |
ggactcttagatgaagatgagtcttggtctttgttccgaaaacatgcacatattgatgaaaatttccccaagtcattagatggtgtgccacaaaaagtat |
23010289 |
T |
|
| Q |
425 |
gcaataaatgtaaaggactgcctctagcaatt |
456 |
Q |
| |
|
||| ||||||||||||| ||| |||||||| |
|
|
| T |
23010288 |
gcatggaatgtaaaggactacctatagcaatt |
23010257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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