View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15589_low_12 (Length: 584)
Name: NF15589_low_12
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 132 - 569
Target Start/End: Original strand, 29219082 - 29219538
Alignment:
| Q |
132 |
tgaaataattgttatagatcatactcatagtgatatagttccaaattccttccagcatagtaatatgaactatgaacaaatttacttgctatatctcagt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29219082 |
tgaaataattgttatagatcatactcatagtgatatagttccaaattccttccagcatagtaatatgaactatgaacaaatttacttgctatatctcagt |
29219181 |
T |
|
| Q |
232 |
ttcttcatgttaagaacattgtaatcatttcctaagtttccaacacttatcatatttgcaccgattctagtttctaaatgcctttttcctacccaaacca |
331 |
Q |
| |
|
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29219182 |
ttcatcatgttaagaacattgtaatcatttgcttagtttccaacacttatcatatttgcaccgattctagtttctaaatgcctctttcctacccaaacca |
29219281 |
T |
|
| Q |
332 |
tacttaagcaccagattaataaaaataatatcaacctagtgcagaagaatctctggtccacatgcacactggatgc-------------------atata |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29219282 |
tacttaagcaccagattaataaaaataatatcaacctagtgcaaaagaatctctggtccacatgcacactggatgcacggttatgaaccaaggttatata |
29219381 |
T |
|
| Q |
413 |
gcttcctatcaagaaacaaatttgatagtaaactaaattaatcaaaatgcagaagatataacagtaccttaacacgaagttccttcattggatgaggtat |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
29219382 |
gcttcctatcaagaaacaaatttgatagtaaactaaattaatcaaaatgcagaagatataacagtaccttaacacaaagttccttcattggatgaggtgt |
29219481 |
T |
|
| Q |
513 |
caataaagctcgaattgtcgtaacaattggaccctaaattataaactttattagtca |
569 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29219482 |
caataaagctcgaattgtggtaacaattggaccctaaattataaactttattagtca |
29219538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 415 - 569
Target Start/End: Original strand, 590802 - 590956
Alignment:
| Q |
415 |
ttcctatcaagaaacaaatttgatagtaaact-aaattaatcaaaatgcagaagatataacagtaccttaacacgaagttccttcattggatgaggtatc |
513 |
Q |
| |
|
||||||| ||| |||||||||||||||||| | |||||||||||| |||| |||||||||||||||||||| || |||||||| ||||||||||||| || |
|
|
| T |
590802 |
ttcctataaagcaacaaatttgatagtaaaattaaattaatcaaa-tgcaaaagatataacagtaccttaatacaaagttcctccattggatgaggtgtc |
590900 |
T |
|
| Q |
514 |
aataaagctcgaattgtcgtaacaattggaccctaaattataaactttattagtca |
569 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
590901 |
aataaagctcgaattgtagtaacaattggaccctgtattataaacttcattagtca |
590956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 415 - 569
Target Start/End: Complemental strand, 183575 - 183422
Alignment:
| Q |
415 |
ttcctatcaagaaacaaatttgatagtaaactaaattaatcaaaatgcagaagatataacagtaccttaacacgaagttccttcattggatgaggtatca |
514 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||||||||||| | |||| |||| ||| ||||||||||||| |||||||||||| |||||||||| | | |
|
|
| T |
183575 |
ttcctatcaagcaacaaatttgatggtaaaataaattaatcata-tgcaaaagaaatagcagtaccttaacaagaagttccttcactggatgaggtctta |
183477 |
T |
|
| Q |
515 |
ataaagctcgaattgtcgtaacaattggaccctaaattataaactttattagtca |
569 |
Q |
| |
|
|||||||| | ||||| |||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
183476 |
ataaagcttggattgtggtaacaattgaaccctatattataaactttattagtca |
183422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 163 - 329
Target Start/End: Original strand, 590494 - 590672
Alignment:
| Q |
163 |
gatatagttccaaattccttccagcatagtaatatgaactatgaa--------------caaatttacttgctatatctcagtttcttcatgttaagaac |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
590494 |
gatatagttccaaattccttccagcatagtaatatgaattatgaagtatgaaacatgaacaactacacttgctatatctcagttccttcatgttaagaat |
590593 |
T |
|
| Q |
249 |
attgtaatcatttcctaagtttccaacacttatcatatttgcaccgattctagtttctaaatgcctttttcctacccaaac |
329 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||| |||| | |||||||||||||||||||||||||||| |
|
|
| T |
590594 |
ataataatcatttcctaagtttccaacactta--gtatttgcacccattcaaatttctaaatgcctttttcctacccaaac |
590672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 29218950 - 29219020
Alignment:
| Q |
1 |
tatcaccctaacaccatag-ctaaatgtatagaaagaatcgaaaatgtttaatcaccacatagcagaagtg |
70 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29218950 |
tatcaccctaacaccataggctaaatgtatagaaaaaatcgaaaatgtttaatcaccacatagcagaagtg |
29219020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 183780 - 183683
Alignment:
| Q |
256 |
tcatttcctaagtttccaacacttatcatatttgcaccgattctagtttctaaatgcctttttcctacccaaaccatacttaagcaccagattaataaaa |
355 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||||| | ||| | ||||| || ||| |||||||||||||||||||||| || |||| || ||||||| |
|
|
| T |
183780 |
tcatgtcctatgtttccaacacttat--tatttgcgctcgttcaaatttcttaaagccattttcctacccaaaccatactttagtaccaaatcaataaaa |
183683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 415 - 569
Target Start/End: Complemental strand, 44606936 - 44606783
Alignment:
| Q |
415 |
ttcctatcaagaaacaaatttgatagtaaactaaattaatcaaaatgcagaagatataacagtaccttaacacgaagttccttcattggatgaggtatca |
514 |
Q |
| |
|
||||||||||| ||||||| |||||||| | ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44606936 |
ttcctatcaagcaacaaatgtgatagtataataaatcaatcaaa-tgcaaaagatataacagtaccttaacacgaagttccttcattggatgaggtgtca |
44606838 |
T |
|
| Q |
515 |
ataaagctcgaattgtcgtaacaattggaccctaaattataaactttattagtca |
569 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44606837 |
ataaagctcgaattgtggtaacaattggaccctatattataaactttattagtca |
44606783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 457 - 569
Target Start/End: Complemental strand, 44628379 - 44628267
Alignment:
| Q |
457 |
aaatgcagaagatataacagtaccttaacacgaagttccttcattggatgaggtatcaataaagctcgaattgtcgtaacaattggaccctaaattataa |
556 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
44628379 |
aaatgcaaaagatataatggtaccttaacacgaagttccttcattggatgaggtgtcaataaagctcgaattgtggtaacaattggaccctatattataa |
44628280 |
T |
|
| Q |
557 |
actttattagtca |
569 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
44628279 |
actttattggtca |
44628267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 44628539 - 44628455
Alignment:
| Q |
193 |
aatatgaactatgaacaaatttacttgctatatctcagtttcttcatgttaagaacattgtaatcatttcctaagtttccaacac |
277 |
Q |
| |
|
||||||| |||||||||| | ||||||||||| ||| ||| |||||||||||||| | ||||||||||| ||| ||| ||||| |
|
|
| T |
44628539 |
aatatgagctatgaacaactatacttgctataactcggttccttcatgttaagaatctcataatcatttcccaagcttctaacac |
44628455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University