View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_16 (Length: 477)
Name: NF15589_low_16
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 14480121 - 14480599
Alignment:
| Q |
1 |
cgaacacattgacacttgacaccgataataatttggaaaaatgataaaattgaaagtaatcacatgcgttgttgttgtgtcggacaccagacatgtc--- |
97 |
Q |
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| T |
14480121 |
cgaacacattgacacttgacaccgataataatttggaaaaatgacaaaattgaaagtaatcacatgcgttgttgttttgtcggacaccggacgtgtcttt |
14480220 |
T |
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| Q |
98 |
-------------actacagagtgtgtgagtgtaacgtgtttgtagaaaatgaaccaattattcactgctgcataggaattaaggctaaactattggctg |
184 |
Q |
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| T |
14480221 |
gatgagaagtgtcactacagagtgtgtgagtgtaacgtgtttgtagaaaatgaaccaattattcactgctgcataggaattaaggctaaactattggctg |
14480320 |
T |
|
| Q |
185 |
tggttttggagataaatgatcacttagtgaaatttgtataatttctgtgagtttttattannnnnnngaaataagcatggcttaaagtcgtg---nnnnn |
281 |
Q |
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| T |
14480321 |
tggttttggagataaatgatcacttagtgaaatttgtataatttctgtgagtttttattatttttttgaaataagcatggcttaaagttgtgtttttttt |
14480420 |
T |
|
| Q |
282 |
nnnngttatatgttccacaatttgtgtttattttctaaataagtaatgtggannnnnnnnatacgtgtaggatctcttaaatattggtatcaacgaagca |
381 |
Q |
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| T |
14480421 |
ttttgttatatgttccacaatttgtgtttattttctaaataagtaatgtgaattttttttatatgtgtaggatctcttaaatattggtatcaacgaagca |
14480520 |
T |
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| Q |
382 |
aagtggattatctggtttctcaatctgctgtttggaaagatgatgctgttaatggagctcttgagagtgctgctttttg |
460 |
Q |
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| T |
14480521 |
aagtggattatctggtttctcaatctgctgtttggaaagatgatgctgttaatggagctcttgagagtgctgctttttg |
14480599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 35855094 - 35855040
Alignment:
| Q |
157 |
ataggaattaaggctaaactattggctgtggttttggagataaatgatcacttag |
211 |
Q |
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| T |
35855094 |
ataggaaataaggctaaactatcgacagtggttttggagacaaatgatcacttag |
35855040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 38749622 - 38749553
Alignment:
| Q |
18 |
gacaccgataataatttggaaaaatgataaaattgaaagtaatcacatgcgttgttgttgtgtcggacac |
87 |
Q |
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| T |
38749622 |
gacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtcggacac |
38749553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 21148747 - 21148807
Alignment:
| Q |
26 |
taataatttggaaaaatgataaaattgaaagtaatcacatgcgttgttgttgtgtcggacac |
87 |
Q |
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| T |
21148747 |
taataatttg-aaaaatgacaaaatggaatgtaatgacatgagttggtgttgtgtcggacac |
21148807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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