View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15589_low_17 (Length: 475)
Name: NF15589_low_17
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 40884263 - 40883815
Alignment:
| Q |
18 |
taacctttgtgtatgctagtcattacatactgcaggtttctttctgtgtttgtaccttattcagtgcagtcataaaattatttcctattttcaaaacttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40884263 |
taacctttgtgtatgctagtcattacatactgcaggtttctttctgtgtttgtaccttattcagtgcagtcataaaattatttcctattttcaaaacttt |
40884164 |
T |
|
| Q |
118 |
tttgtttcattgattccattaggtacccagctgatgtttctaggagggctagaattcaagcagtgttagattggcatcacctgaatttgcgccgtggagc |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40884163 |
tt-gtttcattgattccattaggtacccagctgatgtttccaggagagctagaattcaagcagtgttagattggcatcacctgaatttgcgccgtggagc |
40884065 |
T |
|
| Q |
218 |
aggtgcgttatactgcagaaacaaccctctgtttattttctttcagtgatcaaattttaatatagtcttctttcactaattagagattaatttctggcct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40884064 |
aggtgcgttatactgcagaaacaaccctctgtttattttctttcagtgatcaaattttaatatagtcttctttcactaattagagattaatttctggcct |
40883965 |
T |
|
| Q |
318 |
ggatagctttaaattctcgtgcttatatattatttatcaagttagctaaaaaatcatggctgagctacgaagcttcatagaatatgctcacatagcaggt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40883964 |
ggatagctttaaattctcgtgcttatatattatttatcaagttagctaaaaaatcatggctgagctacgaagcttcatagaatatgctcacatagcaggt |
40883865 |
T |
|
| Q |
418 |
gactgcgtaaagttggttaagcatttctttgagcgcatttatgatgatgt |
467 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40883864 |
gactgcataaagttggttaagcatttctttgagcgcatttatgatgatgt |
40883815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University