View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15589_low_18 (Length: 465)

Name: NF15589_low_18
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15589_low_18
NF15589_low_18
[»] chr7 (7 HSPs)
chr7 (17-457)||(46993025-46993464)
chr7 (316-447)||(39695157-39695288)
chr7 (309-458)||(7995013-7995162)
chr7 (328-457)||(7352340-7352468)
chr7 (348-429)||(11727326-11727407)
chr7 (344-454)||(46265276-46265386)
chr7 (260-300)||(12471870-12471910)
[»] chr8 (8 HSPs)
chr8 (255-457)||(44223297-44223499)
chr8 (316-457)||(17722390-17722531)
chr8 (255-457)||(7956310-7956512)
chr8 (317-457)||(35948903-35949043)
chr8 (312-401)||(34760832-34760921)
chr8 (348-416)||(9040519-9040587)
chr8 (348-437)||(3767646-3767735)
chr8 (264-300)||(9040440-9040476)
[»] chr1 (7 HSPs)
chr1 (250-449)||(25785760-25785959)
chr1 (316-457)||(16584834-16584975)
chr1 (348-457)||(1161403-1161512)
chr1 (316-449)||(8084062-8084195)
chr1 (316-457)||(18461184-18461325)
chr1 (313-457)||(11619990-11620134)
chr1 (317-401)||(42009995-42010079)
[»] scaffold0879 (1 HSPs)
scaffold0879 (312-457)||(550-695)
[»] chr4 (4 HSPs)
chr4 (312-457)||(24466285-24466430)
chr4 (313-457)||(4413526-4413670)
chr4 (316-457)||(23107877-23108022)
chr4 (317-457)||(28319260-28319400)
[»] scaffold0565 (1 HSPs)
scaffold0565 (316-456)||(1815-1955)
[»] chr5 (4 HSPs)
chr5 (316-457)||(16746391-16746532)
chr5 (317-457)||(19947784-19947924)
chr5 (316-417)||(16746550-16746651)
chr5 (316-413)||(31895971-31896068)
[»] chr3 (2 HSPs)
chr3 (321-457)||(46655595-46655731)
chr3 (348-457)||(11503296-11503405)
[»] chr2 (5 HSPs)
chr2 (316-437)||(4638229-4638350)
chr2 (316-457)||(31111488-31111629)
chr2 (317-458)||(13852238-13852379)
chr2 (360-457)||(36009278-36009375)
chr2 (348-437)||(38607073-38607162)
[»] scaffold0070 (1 HSPs)
scaffold0070 (334-456)||(13839-13961)


Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Original strand, 46993025 - 46993464
Alignment:
Q  17 ttttctacccttcaaatattgaatgaaagtgataacccaaatcatgcgtctgccgtaataccaatgcaattgccatgacttttaaaaagctagaaaatcg 116  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46993025 ttttctacccttcaaatagtgaatgaaagggataacccaaatcatgcgtctgccgtcataccaatgcaattgccatgacttttaaaaagctagaaaatcg 46993124  T
Q  117 agattctatgttgacatgagattattgttgtagtttgatgtaacgaagaaaacttgatgcaaaaccaaatagagaagctacgttaatttatcataatgga 216  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46993125 agattctatgttgacatgagattattgttgcagtttgatgtaacgaagaaaacttgatgcaaaaccaaatagagaagctacgttaatttatcataatgga 46993224  T
Q  217 agtgagttatgaatgttcttgagtagtgatagctaggaggtggaagtggttcggataaaaccgacgaaattgaaagtccaaaccnnnnnnncatttgatc 316  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||| |||| |        ||| || |    
T  46993225 agtgagttatgaatgttcttgagtagtgatagctagg-ggtggaagtggttcggacaaaatcgatgaaattgaaagttcaaatctaaaaaatattcgacc 46993323  T
Q  317 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 416  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46993324 ttgtttgggtcggtttgaaattgatccgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgattaacc 46993423  T
Q  417 aatccaatgataaccacactctttattttactagtattatc 457  Q
    ||||| ||||||||||||||| ||||||||||| |||||||    
T  46993424 aatccgatgataaccacactccttattttactaatattatc 46993464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 316 - 447
Target Start/End: Original strand, 39695157 - 39695288
Alignment:
Q  316 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 415  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39695157 cttgtttggttcggtttgaaaccgatctgaaccaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaac 39695256  T
Q  416 caatccaatgataaccacactctttattttac 447  Q
    |||||  ||||||||| ||||| |||||||||    
T  39695257 caatctgatgataacctcactccttattttac 39695288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 309 - 458
Target Start/End: Original strand, 7995013 - 7995162
Alignment:
Q  309 atttgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaacc 408  Q
    |||||| ||||||||| ||||||  ||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  7995013 atttgaccttgtttggttcggttgaaaatcgatccgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagattcgtgaaacc 7995112  T
Q  409 gatgaaccaatccaatgataaccacactctttattttactagtattatct 458  Q
    ||||||||||||| || |||||||||||| ||||||||||| ||||||||    
T  7995113 gatgaaccaatccgataataaccacactccttattttactaatattatct 7995162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 328 - 457
Target Start/End: Complemental strand, 7352468 - 7352340
Alignment:
Q  328 ggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 427  Q
    ||||||||| ||||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  7352468 ggtttgaaaccgatccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgat 7352370  T
Q  428 aaccacactctttattttactagtattatc 457  Q
    |||||||||| ||||||||||| |||||||    
T  7352369 aaccacactccttattttactaatattatc 7352340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 11727407 - 11727326
Alignment:
Q  348 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataa 429  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  11727407 caatcaaaaccgatctagtttggtttggttcgtggtttttcatttcgagatccgtaaaaccgataaaccaatccgatgataa 11727326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 454
Target Start/End: Complemental strand, 46265386 - 46265276
Alignment:
Q  344 gaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttatt 443  Q
    ||||||||| |||| ||||| |||||||||||||    |||| |||||| |||||||  ||||||||||||||||  ||||| ||||  ||||| | |||    
T  46265386 gaatcaatctaaaccgatcttgtttggtttggttttcagtttgtcattttgagatccaagaaaccgatgaaccaaatcaatgttaactccactcctcatt 46265287  T
Q  444 ttactagtatt 454  Q
    |||||| ||||    
T  46265286 ttactattatt 46265276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 12471910 - 12471870
Alignment:
Q  260 aagtggttcggataaaaccgacgaaattgaaagtccaaacc 300  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  12471910 aagtggttcggataaaaccgatgaaattgaaaatccaaacc 12471870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 255 - 457
Target Start/End: Complemental strand, 44223499 - 44223297
Alignment:
Q  255 ggtggaagtggttcggataaaaccgacgaaattgaaagtccaaaccnnnnnnncatttgatcttgtttgggtcggtttgaaatcgatctgaatcaatcga 354  Q
    |||| |||||||||||| |||||| ||||||  |||||||||||||        || ||||||||||||| || |||| ||| ||||||||| |||||||    
T  44223499 ggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatatatgatcttgtttggttcagtttaaaaccgatctgaaccaatcga 44223400  T
Q  355 aactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttactagtatt 454  Q
    |||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||    
T  44223399 aaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacaaatatt 44223300  T
Q  455 atc 457  Q
    |||    
T  44223299 atc 44223297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 316 - 457
Target Start/End: Complemental strand, 17722531 - 17722390
Alignment:
Q  316 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 415  Q
    ||||||||| ||||||||||| | ||| |||  ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  17722531 cttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaac 17722432  T
Q  416 caatccaatgataaccacactctttattttactagtattatc 457  Q
    |||||| ||||||||||||||| ||| ||||||| |||||||    
T  17722431 caatccgatgataaccacactcattactttactaatattatc 17722390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 255 - 457
Target Start/End: Complemental strand, 7956512 - 7956310
Alignment:
Q  255 ggtggaagtggttcggataaaaccgacgaaattgaaagtccaaaccnnnnnnncatttgatcttgtttgggtcggtttgaaatcgatctgaatcaatcga 354  Q
    |||| |||||||||||| |||||| ||||||  |||||||||||||        ||| || |||| || | | ||||||||| ||||  ||| |||||||    
T  7956512 ggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatattcgaccttgctttgtttggtttgaaaccgattcgaaccaatcga 7956413  T
Q  355 aactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttactagtatt 454  Q
    ||| |||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||    
T  7956412 aaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaatccgatgataaccatactccttattttactaatatt 7956313  T
Q  455 atc 457  Q
    |||    
T  7956312 atc 7956310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 317 - 457
Target Start/End: Original strand, 35948903 - 35949043
Alignment:
Q  317 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 416  Q
    |||||||| ||||||||||| ||||| |||||| || |||  |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  35948903 ttgtttggttcggtttgaaaccgatccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaacc 35949002  T
Q  417 aatccaatgataaccacactctttattttactagtattatc 457  Q
    ||||| |||||||| ||| || ||||||||||| |||||||    
T  35949003 aatccgatgataacaacattccttattttactaatattatc 35949043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 34760921 - 34760832
Alignment:
Q  312 tgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 401  Q
    ||||||||||||| ||||||  ||||||| | ||| ||| | |||| |||||||||||||||||||| |||||||| |||| ||||||||    
T  34760921 tgatcttgtttggttcggttcaaaatcgaaccgaaccaacctaaaccgatctagtttggtttggttcttggtttttgattttgagatccg 34760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 416
Target Start/End: Original strand, 9040519 - 9040587
Alignment:
Q  348 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 416  Q
    ||||| |||| ||||| ||||||||||||||  |||||||||||| ||||||   ||||||||||||||    
T  9040519 caatctaaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaacc 9040587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 437
Target Start/End: Complemental strand, 3767735 - 3767646
Alignment:
Q  348 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactc 437  Q
    ||||| |||| ||||||||||||||||||||  ||||||| |||| |||||||    |||||||||||| | || ||| ||||| |||||    
T  3767735 caatctaaaccgatctagtttggtttggttctcggttttttattttgagatccaatgaaccgatgaaccgaaccgatgctaacctcactc 3767646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 9040440 - 9040476
Alignment:
Q  264 ggttcggataaaaccgacgaaattgaaagtccaaacc 300  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  9040440 ggttcggataaaaccgatgaaatcgaaagtccaaacc 9040476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 250 - 449
Target Start/End: Original strand, 25785760 - 25785959
Alignment:
Q  250 taggaggtggaagtggttcggataaaaccgacgaaattgaaagtccaaaccnnnnnnncatttgatcttgtttgggtcggtttgaaatcgatctgaatca 349  Q
    |||| |||| |||||||||||| |||||| |||||| ||||| | ||||||        ||  || ||||||||| ||||||||||| ||||| ||| ||    
T  25785760 tagggggtgtaagtggttcggacaaaaccaacgaaactgaaatttcaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatccgaacca 25785859  T
Q  350 atcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttacta 449  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  25785860 atcgaaaccgatatagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacattctttattttacta 25785959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 316 - 457
Target Start/End: Complemental strand, 16584975 - 16584834
Alignment:
Q  316 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 415  Q
    ||||||||| ||||||||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16584975 cttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaac 16584876  T
Q  416 caatccaatgataaccacactctttattttactagtattatc 457  Q
    |||||  |||||||||| |||| ||||||||||| |||||||    
T  16584875 caatctgatgataaccaaactccttattttactaatattatc 16584834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 348 - 457
Target Start/End: Complemental strand, 1161512 - 1161403
Alignment:
Q  348 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttac 447  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  1161512 caatcgaaaccgatctagtttggtttggttcatggtttttcatttcgatatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttac 1161413  T
Q  448 tagtattatc 457  Q
    || |||||||    
T  1161412 taatattatc 1161403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 316 - 449
Target Start/End: Original strand, 8084062 - 8084195
Alignment:
Q  316 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 415  Q
    ||||||||| | ||||||||| | ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||     
T  8084062 cttgtttggtttggtttgaaaccaatccgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaat 8084161  T
Q  416 caatccaatgataaccacactctttattttacta 449  Q
    |||||| ||||||||||||||| |||||||||||    
T  8084162 caatccgatgataaccacactccttattttacta 8084195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 316 - 457
Target Start/End: Original strand, 18461184 - 18461325
Alignment:
Q  316 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 415  Q
    ||||||| | ||||||| ||||||||||| | ||||| |||| ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  18461184 cttgtttagttcggtttcaaatcgatctggaccaatcaaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaac 18461283  T
Q  416 caatccaatgataaccacactctttattttactagtattatc 457  Q
    |||||| ||||||||||||||| ||| |||| || |||||||    
T  18461284 caatccgatgataaccacactcattaatttattaatattatc 18461325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 313 - 457
Target Start/End: Original strand, 11619990 - 11620134
Alignment:
Q  313 gatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatg 412  Q
    |||||||||||| || |||||||| |||||  ||  ||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  11619990 gatcttgtttggttcagtttgaaaccgatccaaactaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatctgtgaaaccgatg 11620089  T
Q  413 aaccaatccaatgataaccacactctttattttactagtattatc 457  Q
    ||||||||| ||||||  ||||||  ||||||||||| |||||||    
T  11620090 aaccaatccgatgatactcacactacttattttactaatattatc 11620134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 401
Target Start/End: Complemental strand, 42010079 - 42009995
Alignment:
Q  317 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 401  Q
    |||||||| ||||||||||| |||||  || |||| ||||| |||||||||| |||||  |||||||||||||||| ||||||||    
T  42010079 ttgtttggttcggtttgaaaccgatccaaaccaattgaaaccgatctagtttagtttgactcatggtttttcattttgagatccg 42009995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 312 - 457
Target Start/End: Complemental strand, 695 - 550
Alignment:
Q  312 tgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat 411  Q
    ||||||||||||| ||||||||||| ||||| ||| |||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  695 tgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgat 596  T
Q  412 gaaccaatccaatgataaccacactctttattttactagtattatc 457  Q
    |||||||||| ||||||||||||||| ||||||||||| |||||||    
T  595 gaaccaatccgatgataaccacactccttattttactaatattatc 550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 312 - 457
Target Start/End: Complemental strand, 24466430 - 24466285
Alignment:
Q  312 tgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat 411  Q
    ||||||||||||| ||||||||||| ||||| ||| |||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  24466430 tgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgat 24466331  T
Q  412 gaaccaatccaatgataaccacactctttattttactagtattatc 457  Q
    |||||||||| ||||||||||||||| ||||||||||| |||||||    
T  24466330 gaaccaatccgatgataaccacactccttattttactaatattatc 24466285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 313 - 457
Target Start/End: Original strand, 4413526 - 4413670
Alignment:
Q  313 gatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatg 412  Q
    |||||||||||| ||||||| ||| ||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  4413526 gatcttgtttggttcggtttaaaaccgatccgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgata 4413625  T
Q  413 aaccaatccaatgataaccacactctttattttactagtattatc 457  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||    
T  4413626 aaccaatccgatgataatcacactccttattttactagtattatc 4413670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 316 - 457
Target Start/End: Complemental strand, 23108022 - 23107877
Alignment:
Q  316 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 415  Q
    ||||||||| | ||||||||| ||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23108022 cttgtttggtttggtttgaaaccgatccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaac 23107923  T
Q  416 c----aatccaatgataaccacactctttattttactagtattatc 457  Q
    |    ||||| |||||||||| |||| ||||||||||| |||||||    
T  23107922 caatcaatccgatgataaccatactccttattttactaatattatc 23107877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 317 - 457
Target Start/End: Complemental strand, 28319400 - 28319260
Alignment:
Q  317 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 416  Q
    |||||||| ||||||||||| || || ||| ||||| |||  ||| || ||||||||||||||||||||||||||||||||| |||||| | |||||| |    
T  28319400 ttgtttggttcggtttgaaaccgttccgaaccaatcaaaatcgatttaatttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatc 28319301  T
Q  417 aatccaatgataaccacactctttattttactagtattatc 457  Q
    ||||  ||||||||||||||| ||||||||||| |||||||    
T  28319300 aatctgatgataaccacactccttattttactaatattatc 28319260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 316 - 456
Target Start/End: Complemental strand, 1955 - 1815
Alignment:
Q  316 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 415  Q
    ||||||||| ||||||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  1955 cttgtttggttcggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggtttttaatttcgagattcgtgaaaccgatgaac 1856  T
Q  416 caatccaatgataaccacactctttattttactagtattat 456  Q
    |||||| |||||||| |||||| ||||||||||| ||||||    
T  1855 caatccgatgataacaacactccttattttactaatattat 1815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 316 - 457
Target Start/End: Complemental strand, 16746532 - 16746391
Alignment:
Q  316 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 415  Q
    ||||||||| ||||||||||| |||||  || |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  16746532 cttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaac 16746433  T
Q  416 caatccaatgataaccacactctttattttactagtattatc 457  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||    
T  16746432 caatccgatgataacctcactccttattttactaatattatc 16746391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 317 - 457
Target Start/End: Original strand, 19947784 - 19947924
Alignment:
Q  317 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 416  Q
    |||||||| || |||||||| |||||  || |||||||| |||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  19947784 ttgtttggttcagtttgaaaccgatccaaaccaatcgaatctgatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaacc 19947883  T
Q  417 aatccaatgataaccacactctttattttactagtattatc 457  Q
    ||||| ||||||||||||||| ||||||||||| |||||||    
T  19947884 aatccgatgataaccacactccttattttactaatattatc 19947924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 316 - 417
Target Start/End: Complemental strand, 16746651 - 16746550
Alignment:
Q  316 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 415  Q
    ||||||||| ||||||||||| |||||  || |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  16746651 cttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaac 16746552  T
Q  416 ca 417  Q
    ||    
T  16746551 ca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 316 - 413
Target Start/End: Original strand, 31895971 - 31896068
Alignment:
Q  316 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatga 413  Q
    ||||||||| ||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  31895971 cttgtttggttcggtttgaaaccgatctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaaccgatga 31896068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 46655595 - 46655731
Alignment:
Q  321 ttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatc 420  Q
    |||| ||||||||||| ||||| ||| ||||| ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46655595 ttggttcggtttgaaaccgatccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaatc 46655694  T
Q  421 caatgataaccacactctttattttactagtattatc 457  Q
    ||||||||||||||||  ||||||||||| |||||||    
T  46655695 caatgataaccacacttcttattttactaatattatc 46655731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 457
Target Start/End: Complemental strand, 11503405 - 11503296
Alignment:
Q  348 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttac 447  Q
    |||||||||| |||||  |||||||||||||  | |||||||||| |||||||  ||||||||| |||| | || ||| ||||| |||||   |||||||    
T  11503405 caatcgaaaccgatcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaaccgaacccatgctaacctcactccccattttac 11503306  T
Q  448 tagtattatc 457  Q
    || |||||||    
T  11503305 tattattatc 11503296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 316 - 437
Target Start/End: Original strand, 4638229 - 4638350
Alignment:
Q  316 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 415  Q
    |||||| || ||||||||||||||||| ||| ||||| | |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4638229 cttgttcggttcggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatggtttttcattttgagatccgtgaaaccgatgaac 4638328  T
Q  416 caatccaatgataaccacactc 437  Q
    |||||| |||||||||||||||    
T  4638329 caatccgatgataaccacactc 4638350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 316 - 457
Target Start/End: Original strand, 31111488 - 31111629
Alignment:
Q  316 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 415  Q
    ||||||||| |||||||||||  |||||||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||    
T  31111488 cttgtttggttcggtttgaaactgatctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaac 31111587  T
Q  416 caatccaatgataaccacactctttattttactagtattatc 457  Q
    |||||   |||||||||||||  ||||||||||| |||||||    
T  31111588 caatctggtgataaccacacttcttattttactaatattatc 31111629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 317 - 458
Target Start/End: Complemental strand, 13852379 - 13852238
Alignment:
Q  317 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 416  Q
    |||||||  ||||||||||| |||||  || ||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  13852379 ttgtttgattcggtttgaaaccgatccaaaccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaacc 13852280  T
Q  417 aatccaatgataaccacactctttattttactagtattatct 458  Q
    ||||   |||||||||||||| |||||||| || ||||||||    
T  13852279 aatctgttgataaccacactccttattttattaatattatct 13852238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 360 - 457
Target Start/End: Original strand, 36009278 - 36009375
Alignment:
Q  360 atctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttactagtattatc 457  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||||||| |||||||    
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgataaccacactccttattttactaatattatc 36009375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 38607073 - 38607162
Alignment:
Q  348 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactc 437  Q
    ||||| ||||||| || |||||||| ||||| ||||||||||||| ||||||| | ||||||||||||| ||   ||| |||||||||||    
T  38607073 caatctaaactgaccttgtttggttcggttcttggtttttcattttgagatccataaaaccgatgaaccgatttgatgctaaccacactc 38607162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 456
Target Start/End: Original strand, 13839 - 13961
Alignment:
Q  334 aaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccac 433  Q
    ||||||| | ||| ||||| ||||||||||  ||||||||||||   |||||||||||| |||||||   ||||||||||| | | || ||| ||||| |    
T  13839 aaatcgaaccgaaccaatctaaactgatcttatttggtttggttatcggtttttcattttgagatccaataaaccgatgaatcgaaccgatgctaacctc 13938  T
Q  434 actctttattttactagtattat 456  Q
    ||||   ||||||||| ||||||    
T  13939 actccccattttactattattat 13961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University