View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_19 (Length: 448)
Name: NF15589_low_19
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 232 - 427
Target Start/End: Original strand, 37804076 - 37804264
Alignment:
| Q |
232 |
gtcttatgaattaccaatgtgtattttgaagtaacatactttgagtcttttgatgtatgactatgatgtgttatatacattctgctttagatatgaatac |
331 |
Q |
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| T |
37804076 |
gtcttatgaattaccgatgtgtattttgaagtcacatacttttagtcttttgatgtatga------tgtgttata--cattctgctttagatatgaatac |
37804167 |
T |
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| Q |
332 |
acttttatgttatgaaataaa-ttatatgcttttcatggagagtgattatatatgtatacgagttatgttaattaattaggttttacctttgagcgt |
427 |
Q |
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| T |
37804168 |
acttttatgttatgaaataaaattatatgcttttcatggagagtgattatatatgtatacgagttatgttaattaattaggttttacctttgagcgt |
37804264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 37804015 - 37804077
Alignment:
| Q |
16 |
atatcttcatgtaataaacttctaggaatactttagatacaacattaccaggtacatataagt |
78 |
Q |
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| T |
37804015 |
atatcttcatgtaataaacttctaggaatactttagatacaacattaccaggtacatataagt |
37804077 |
T |
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