View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_2 (Length: 731)
Name: NF15589_low_2
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 60 - 528
Target Start/End: Original strand, 9965050 - 9965519
Alignment:
| Q |
60 |
gtcttttagaatgtgacaaaatcattatcacatggtcactagtgctacgaaatagtcaaaactgtgtttggtgtcaaacacaacgctgacatgtgtagtt |
159 |
Q |
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| T |
9965050 |
gtcttttagaatatgacaaaatcgttatcacatggtcactagtgctacgaaatagtcaaaactgtgtttggtgttaaacacaacgctgatatgtgtagtt |
9965149 |
T |
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| Q |
160 |
acattcaatcacttttattttaaaa-aatattattattttgtatatgtcagagtcgaatttgatgtttgtgtctatattaatgcttgatagattatatat |
258 |
Q |
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| T |
9965150 |
acattcaatcactttcattttaaaaaaatattattattttgtatgtgtcagagttgaattcgatgttcgtgtctatattaatgcttgatagattatatat |
9965249 |
T |
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| Q |
259 |
ggggatcacctattcacttttgataatgtttgagaatatcacttacttgaaggagattagagaccatagaagtcctaatagactagaatatgtgttagga |
358 |
Q |
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| T |
9965250 |
ggggatcacctattcactttagataatgtttgagagtatcacttacttgaaggagattagagaccatagaagtcctaatagactagaatatgtgttagga |
9965349 |
T |
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| Q |
359 |
tttctagaaagttttcttccaactacaataagtataagccttaacattacaaaggcatatggcattttctggctactggcaatttggtctttggggtcca |
458 |
Q |
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| T |
9965350 |
tttctagaaagttttcttccagctacaataagtataagccttaacattacaaaggcatatggcattttcgggctactggcaatttggtctttggggtcca |
9965449 |
T |
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| Q |
459 |
caacttcccctgccactgagactttgaggctgtctctgaagctaatttctttatctgtcatatattagcc |
528 |
Q |
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| T |
9965450 |
caacttcccctgccactgagactttgaggctgtctctgaagctaatttctttatctgtcatatattagcc |
9965519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 588 - 722
Target Start/End: Original strand, 9965579 - 9965713
Alignment:
| Q |
588 |
gataatgctaatagatcatcaagctcaaatttgctcagccacttacataattagattgtccattaataatgaaagtagacttaggtaacaattattgaaa |
687 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9965579 |
gataatgttaatacatcatcaagctcaaatttgctcagccacttacataattagactgtccattaatgatgaaagtagacttaggtaacaattattgaaa |
9965678 |
T |
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| Q |
688 |
aggtttttgtaattataattgggttttagtataat |
722 |
Q |
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| T |
9965679 |
aggttttggtaattataattgggttttagtataat |
9965713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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