View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_20 (Length: 415)
Name: NF15589_low_20
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 88 - 415
Target Start/End: Original strand, 25791303 - 25791630
Alignment:
| Q |
88 |
gatacaggtgcccatgccacatcaatcgtgatacatttgtgataagaatatttgatgtatttagcattattgttatttttatgacaatctttttctgtgt |
187 |
Q |
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| T |
25791303 |
gatacaagtgcccatgccacatcaatcgtgatacatttgtgataagaatatttgatgtatttagcattattgttatttttatgacaatctttttctgtgt |
25791402 |
T |
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| Q |
188 |
tacattataacaaagtttttaaatcattagtattagaacaccttgtgaatattataacaaagttttttatgtatcattactcnnnnnnnaatgattgggg |
287 |
Q |
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| T |
25791403 |
tacattataacaaattttttaaatcattagtattagaacaccttgtgaatattataacaaagttttttatgtatcattactctttttttaatgattgggg |
25791502 |
T |
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| Q |
288 |
tgaatattttaatacatgaaagtttactataaatatatttatgtattaacaactttccacaactcaaaatctttagatccagttgaaggaaaagagggag |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25791503 |
tgaatattttaatacatgaaagtttactataaatatatttatgtattaacaactttccacaactcaaaatctttagatccagttgaaggaaaagagggag |
25791602 |
T |
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| Q |
388 |
gctattaatacttaagaatgtcaagtgt |
415 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
25791603 |
gctattaatacttaagaatgtcaagtgt |
25791630 |
T |
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