View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15589_low_22 (Length: 398)

Name: NF15589_low_22
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15589_low_22
NF15589_low_22
[»] chr6 (13 HSPs)
chr6 (4-379)||(6394355-6394729)
chr6 (172-343)||(14820140-14820311)
chr6 (6-119)||(14820443-14820556)
chr6 (12-105)||(6589565-6589658)
chr6 (36-133)||(14818152-14818248)
chr6 (9-76)||(6423010-6423077)
chr6 (270-344)||(6426035-6426109)
chr6 (2-80)||(10579969-10580047)
chr6 (3-81)||(19632227-19632305)
chr6 (51-122)||(6426279-6426350)
chr6 (9-69)||(7119002-7119062)
chr6 (9-69)||(7131480-7131540)
chr6 (332-376)||(14820083-14820127)
[»] chr7 (2 HSPs)
chr7 (6-135)||(15092387-15092515)
chr7 (258-303)||(15092659-15092704)
[»] chr1 (3 HSPs)
chr1 (137-379)||(49218728-49218976)
chr1 (70-119)||(49219072-49219121)
chr1 (23-123)||(33160474-33160578)


Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 4 - 379
Target Start/End: Complemental strand, 6394729 - 6394355
Alignment:
Q  4 ttgcgtcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6394729 ttgcgtcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctgagaaa 6394630  T
Q  104 tttcctttttaaaatgtcaatcttacaaatttaaaaggctaggccatggccggatgatggatttttgacaaccatttcagtcaatttgtgaaataatgcc 203  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  6394629 tttcctttttaaaatgtca-tcttacaaatttaaaaggctaggccatggccggatggtggatttttgacaaccattttagtcaatttgtgaaataatgcc 6394531  T
Q  204 gatgcccaacatggcagcgtcataagtcgcaactctgcagtcaaacttactttgtattttaatccaacttgaaagttaatatgaagtaaataaggcatat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394530 gatgcccaacatggcagcgtcataagtcgcaactctgcagtcaaacttactttgtattttaatccaacttgaaagttaatatgaagtaaataaggcatat 6394431  T
Q  304 ggcatatgaattgattaatgatatgtgtttgaagtatgataactcaagtatgtttaacttgataatatgtgtacct 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394430 ggcatatgaattgattaatgatatgtgtttgaagtatgataactcaagtatgtttaacttgataatatgtgtacct 6394355  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 343
Target Start/End: Complemental strand, 14820311 - 14820140
Alignment:
Q  172 caaccatttcagtcaatttgtgaaataatgccgatgcccaacatggcagcgtcataagtcgcaactctgcagtcaaacttactttgtattttaatccaac 271  Q
    ||||||||  ||||||||||| ||  ||||| |||||| || ||||| ||| || |||||||||||| |  |||||||||| ||| |||||| || ||||    
T  14820311 caaccattgtagtcaatttgtaaaggaatgctgatgcctaatatggcggcgccaaaagtcgcaactcagtggtcaaacttaatttatattttgattcaac 14820212  T
Q  272 ttgaaagttaatatgaagtaaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgat 343  Q
    ||||||| ||||||  ||||||||| |  ||| || ||||||||||||||||||||||||||||||||||||    
T  14820211 ttgaaagctaatatatagtaaataatgtgtatagcttatgaattgattaatgatatgtgtttgaagtatgat 14820140  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 14820556 - 14820443
Alignment:
Q  6 gcgtcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatt 105  Q
    |||||||||||| | | |||||||||||| |||||||||  ||||||||||||||||||||||||| ||||||||| || |||||| ||||| |||| ||    
T  14820556 gcgtcgtggatgtcatctttgctagtattatgaaattgcgttgctgaagtttgaacactgtaagttgtttttgttttaagatttacatctctgagaattt 14820457  T
Q  106 tcctttttaaaatg 119  Q
     |||||||||||||    
T  14820456 gcctttttaaaatg 14820443  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 6589565 - 6589658
Alignment:
Q  12 tggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatt 105  Q
    |||||||| | ||| ||||||||||||||||||| |||| |||| ||||||||||||||| ||||||||| || ||| |||||||| |||||||    
T  6589565 tggatgccatctttactagtattctgaaattgctgtgctaaagtatgaacactgtaagttgtttttgttttaatattcacttctctgagaaatt 6589658  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 14818248 - 14818152
Alignment:
Q  36 tgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatttcctttttaaaatgtcaatcttacaaat 133  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||| || |||||| ||| | |||| || ||||||||||||| | |||||||||||    
T  14818248 tgaaattgctttgctgaagtttgaacactgtaagttgtttttgttttaagatttacatctttgagaatttgcctttttaaaatgac-atcttacaaat 14818152  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 6423077 - 6423010
Alignment:
Q  9 tcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttt 76  Q
    ||||||||||| | |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  6423077 tcgtggatgccttctttgctagtattctgaaatttctatgctaaagtttgaacactgtaagttgtttt 6423010  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 6426109 - 6426035
Alignment:
Q  270 acttgaaagttaatatgaagtaaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgata 344  Q
    ||||||||| |||||||||  ||||||||||||| || |||||||||| |||||||||||||||||||| |||||    
T  6426109 acttgaaagctaatatgaacaaaataaggcatatagcttatgaattgactaatgatatgtgtttgaagtgtgata 6426035  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 10579969 - 10580047
Alignment:
Q  2 tcttgcgtcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtt 80  Q
    ||||||||| |||||||| | |||||||||||||| ||| ||||| |||||||||||||| ||||||||| ||||||||    
T  10579969 tcttgcgtcatggatgccttctttgctagtattctaaaaatgctacgctgaagtttgaactctgtaagttgtttttgtt 10580047  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 19632305 - 19632227
Alignment:
Q  3 cttgcgtcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgttt 81  Q
    |||||||| |||||||| | ||||||||||||| |||| ||||||  |||||||||||| ||||||||| |||||||||    
T  19632305 cttgcgtcatggatgccttctttgctagtattccgaaaatgctattatgaagtttgaaccctgtaagttgtttttgttt 19632227  T

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Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 6426350 - 6426279
Alignment:
Q  51 gaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatttcctttttaaaatgtca 122  Q
    |||||||||||| |||||||| ||||||||| |  |||||||||||| ||||||  ||||||||||||||||    
T  6426350 gaagtttgaacattgtaagttgtttttgttttatgatttacttctctgagaaatagcctttttaaaatgtca 6426279  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 7119062 - 7119002
Alignment:
Q  9 tcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaag 69  Q
    ||||||||| | | |||||||||||| |  |||||||||| |||||||| |||||||||||    
T  7119062 tcgtggatgtcttctttgctagtattatttaattgctatgttgaagtttaaacactgtaag 7119002  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 7131540 - 7131480
Alignment:
Q  9 tcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaag 69  Q
    ||||||||| | | |||||||||||| |  |||||||||| |||||||| |||||||||||    
T  7131540 tcgtggatgtcttctttgctagtattatttaattgctatgttgaagtttaaacactgtaag 7131480  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 14820127 - 14820083
Alignment:
Q  332 ttgaagtatgataactcaagtatgtttaacttgataatatgtgta 376  Q
    ||||||||||| ||||| || ||||||||||||||| ||||||||    
T  14820127 ttgaagtatgaaaactctagaatgtttaacttgatattatgtgta 14820083  T

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Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 15092387 - 15092515
Alignment:
Q  6 gcgtcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatt 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  15092387 gcgtcgtggatgccatatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaagatttacttctctgagaaatt 15092486  T
Q  106 tcctttttaaaatgtcaatcttacaaattt 135  Q
    |||||||||||||||| ||||| |||||||    
T  15092487 tcctttttaaaatgtc-atctttcaaattt 15092515  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 15092659 - 15092704
Alignment:
Q  258 tattttaatccaacttgaaagttaatatgaagtaaataaggcatat 303  Q
    |||||| || ||||||||||| |||||| |||||||||||||||||    
T  15092659 tattttgattcaacttgaaagctaatataaagtaaataaggcatat 15092704  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 137 - 379
Target Start/End: Complemental strand, 49218976 - 49218728
Alignment:
Q  137 aaaggctaggccatggccggatgatggatttttgacaaccatttcagtcaatttgtgaaat-aatgccgatgcccaacatggcagcgtcataagtcgcaa 235  Q
    |||||||| |||||||  |||||| |||| ||| ||||||||| |||||||||| |||    |||||||||||||| ||||||||||  ||| |||||||    
T  49218976 aaaggctacgccatggtaggatgacggatgtttaacaaccattgcagtcaatttatgattggaatgccgatgcccaccatggcagcgctatatgtcgcaa 49218877  T
Q  236 ctctgcagtcaaacttactttgtattttaatccaacttgaaagttaata-----tgaagtaaataaggcatatggcatatgaattgattaatgatatgtg 330  Q
     || || ||||| | || |||| ||||| || ||||||||||| | |||     ||||||||||||||||||| || ||||||||||||||||||||||     
T  49218876 ttcagctgtcaagcataatttgaatttttattcaacttgaaagctgatatgaagtgaagtaaataaggcatatagcttatgaattgattaatgatatgta 49218777  T
Q  331 tttgaagtatgataactcaagtatgtttaacttgataatatgtgtacct 379  Q
    ||||  |||||||||||||  || |||||||||||||||||||| ||||    
T  49218776 tttggggtatgataactcatataagtttaacttgataatatgtgcacct 49218728  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 49219121 - 49219072
Alignment:
Q  70 ttctttttgtttcaacatttacttctctaagaaatttcctttttaaaatg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49219121 ttctttttgtttcaagatttacttctctaagaaatttcctttttaaaatg 49219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 33160578 - 33160474
Alignment:
Q  23 tttgctagtattctgaaattgctatgctgaagttt----gaacactgtaagttctttttgtttcaacatttacttctctaagaaatttcctttttaaaat 118  Q
    |||||||||||| ||||| ||||||||| ||||||    ||||  |||||||| |||||| || || |||||||||||| ||||||| | ||||||||||    
T  33160578 tttgctagtattatgaaagtgctatgctcaagtttcattgaactttgtaagttgtttttgctttaagatttacttctctgagaaattacttttttaaaat 33160479  T
Q  119 gtcaa 123  Q
    |||||    
T  33160478 gtcaa 33160474  T

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