View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_24 (Length: 372)
Name: NF15589_low_24
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 42741183 - 42740844
Alignment:
| Q |
1 |
tgatatttttatctcatacgttagaagtactactaattactt-attgaacaaaatgaaatgaactgaaaatgtgaagttgatattttccttttgtctata |
99 |
Q |
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| T |
42741183 |
tgatatttttatctcatacgctagaagtactactaattactttattgaataaaattaaatgaactgaaaatg--aagtttatattttccttttatttata |
42741086 |
T |
|
| Q |
100 |
aatatcttaaagagtttggaagtgtgtgtgtttcatatttgtctgtttgtgcgaaagaatatttgactatgactttgaattttttgggataaattcattt |
199 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
42741085 |
aatatcttaaagcgtttggaa--------------tatttgtctgtttgtgcgaaagaataattgactatgactttgaattttggggga--aattcattt |
42741002 |
T |
|
| Q |
200 |
attcagatgtgcgaggctattgacagctcagtgacgggaaagaatacattagagaagttgtatgatgctgcaagtatatactacaactatagtggtacct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741001 |
attcagatgtgcgaggctattgacagctcagtgacgggaaagaatacattagagaagttgtatgatgctgcaagtatatactacaactatagtggtacct |
42740902 |
T |
|
| Q |
300 |
ctaagtgtttcgatttaaatgatcattctgatcctcatgatcttggaggatggcagtg |
357 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42740901 |
ctaagtgtttcgatttaaatgatcattctgatcctcatgatcttggaggatggcagtg |
42740844 |
T |
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