View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_29 (Length: 346)
Name: NF15589_low_29
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_29 |
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| [»] scaffold1451 (1 HSPs) |
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| [»] scaffold0526 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 20750407 - 20750082
Alignment:
| Q |
18 |
ggtttaaagtgaaacatcttcatctttgcagcccatgccaccatcttcatcgagctttgtttctagggattgtaagcttccatatctaggtgatttatga |
117 |
Q |
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| T |
20750407 |
ggtttaaagtgaaacatcttcatctctgcagcccatgccaccatcttcatcgagctttgtttctagggattgtaagcttccagatctaggtgatttatga |
20750308 |
T |
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| Q |
118 |
catgtt---tttgttgtttagttcgttggtgtaattgttaggttccttccttcaaattgactttagactcttaggctcaaaaggactttggcttcgctct |
214 |
Q |
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| T |
20750307 |
catgttgtttttgttgtttagttcgttggtgtaattgtttggttccttccttcaaattgactttagactcttaggctcaaaaggactttggcttcactct |
20750208 |
T |
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| Q |
215 |
ttgtatgctttcttgtgctttaacccatgtaacagtcgttgatgctaannnnnnnnnnnnnnnnnnnngaagttgtcaataaaggtacagaagaagattc |
314 |
Q |
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| T |
20750207 |
ttgtatgctttcttgtgctttaacccatgtaacagtcgttgatgctaatttttttatctttcttttttgaagctgtcaataaaggtacagaagaagattc |
20750108 |
T |
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| Q |
315 |
tgagaattcaaagagattttcttcga |
340 |
Q |
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| T |
20750107 |
tgagaattcaaagagattttcttcga |
20750082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1451 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold1451
Description:
Target: scaffold1451; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 1296 - 1078
Alignment:
| Q |
19 |
gtttaaagtgaaacatcttcatctttgcagcccatgccaccatcttcatcgagctttgtttctagggattgtaagcttccatatctaggtgatttatgac |
118 |
Q |
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| T |
1296 |
gtttaaagtgaagcatcgtcatctctgcaacctaggctaccatcttcattgggatttttttcttgggattgtaagcttcacgatctagacgatttatgat |
1197 |
T |
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| Q |
119 |
atg------tttttgttgtttagttcgttggtgtaattgttaggttccttccttcaaattgactttagactcttaggctcaaaaggactttggcttcgct |
212 |
Q |
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| T |
1196 |
gtgatgttgtttttgttgtttagtttgttggtgtaattgttgggtttcttccttcatattggctttagactctttggctcgaaagaacttcggcttcacg |
1097 |
T |
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| Q |
213 |
ctttgtatgctttcttgtg |
231 |
Q |
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| T |
1096 |
ctctatatgctttcttgtg |
1078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0526 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0526
Description:
Target: scaffold0526; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 9931 - 10034
Alignment:
| Q |
128 |
ttgtttagttcgttggtgtaattgttaggttccttccttcaaattgactttagactcttaggctcaaaaggactttggcttcgctctttgtatgctttct |
227 |
Q |
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|||||||||| || |||||||| |||||||||||||||||| |||| ||||||||| || | |||||||| | || |||| || || ||||||||||| |
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| T |
9931 |
ttgtttagtttgtgggtgtaatggttaggttccttccttcatattggctttagactttttgtctcaaaagaatttcagctttgcgctcggtatgctttct |
10030 |
T |
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| Q |
228 |
tgtg |
231 |
Q |
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|||| |
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| T |
10031 |
tgtg |
10034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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