View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_3 (Length: 727)
Name: NF15589_low_3
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 284 - 711
Target Start/End: Complemental strand, 1938644 - 1938219
Alignment:
| Q |
284 |
atgatgtggcatattcatcgatgaaataacagaatttactttaccatgctacatagtcatattataaaaaatatctaataaatatcgtcgtgacaccgac |
383 |
Q |
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| T |
1938644 |
atgatgtggcatattcatcgatgaaataacagaatttactttaccaggctacatagtaatattataaaaaatatctaataaatatcgtcgtgacaccgat |
1938545 |
T |
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| Q |
384 |
gaatataccaagtaggaaaaaatgaatgtttattcaatttatttttagaaaaaatattcatttgcacctgctgagtgtcttccatatgatctatccagtc |
483 |
Q |
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| T |
1938544 |
gaata--ccaagtaggaaaaaatgaatgtttattcaatttatttttagaaaaaatattcatttgcacctgctgagtgtcttccatatgatctatccagtc |
1938447 |
T |
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| Q |
484 |
atgtatcataaattgaatccaagatgctgcaatcacattgaattgcttccctgtgtccttatatgttctcctctctagaagttttgttgccaccaccatt |
583 |
Q |
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| T |
1938446 |
atgtatcataaattgaatccaagatgctgcaatcacattgaattgcttccctgtgtccttatatgttctcctctctagaagttttgttgccaccaccatt |
1938347 |
T |
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| Q |
584 |
gggtctggtttcaacaactgcataaacacaatatttttcttggtcaaacaaaaatattaatatttatatatattctttgaaaattatgtactcatcatag |
683 |
Q |
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| T |
1938346 |
gggtctggtttcaacaactgcataaacacaatatttttcttggtcaaacaaaaatattaatatttatatatattctttgaaaattatgtactcatcatag |
1938247 |
T |
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| Q |
684 |
tgttttttgtgtagctaaccttttattc |
711 |
Q |
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| T |
1938246 |
tgttttttgtgtagctaaccttttattc |
1938219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 1938927 - 1938742
Alignment:
| Q |
1 |
actaaaataaaatgttaaatatctgtatgaaatttaaggatgtctaaacataattggcgataaaaataatgtgttgactttattaactactcttggttaa |
100 |
Q |
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| T |
1938927 |
actaaaataaaatgttaaatatctgtatgaaatttaaggatgtctaaacataattggcgataaaaataatgtgttgactttattaactactcttggttaa |
1938828 |
T |
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| Q |
101 |
ccaagtgaattgataaattttgatatttttgtcaaagagaatctaatttaatttagtttttattagtatttgggattgaaacaaag |
186 |
Q |
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| T |
1938827 |
ccaagtaaattgataaattttgatatttttgtcaaagagaatctaatttaatttagtttttattagtatttgggattgaaacaaag |
1938742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 461 - 605
Target Start/End: Complemental strand, 1924281 - 1924137
Alignment:
| Q |
461 |
tcttccatatgatctatccagtcatgtatcataaattgaatccaagatgctgcaatcacattgaattgcttccctgtgtccttatatgttctcctctcta |
560 |
Q |
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| T |
1924281 |
tcttccaaatgatctatccaatcatgtatcataaattgaatccaagtagctgcaatcacattaaattgcttgcctgtgtccttgtattctctcctctcca |
1924182 |
T |
|
| Q |
561 |
gaagttttgttgccaccaccattgggtctggtttcaacaactgca |
605 |
Q |
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| T |
1924181 |
aaagttttgtagccaccaccattggatctggcttcaacagctgca |
1924137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 457 - 617
Target Start/End: Complemental strand, 1953576 - 1953416
Alignment:
| Q |
457 |
agtgtcttccatatgatctatccagtcatgtatcataaattgaatccaagatgctgcaatcacattgaattgcttccctgtgtccttatatgttctcctc |
556 |
Q |
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|||||| |||| |||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||| ||||| ||||||| | ||| | ||| |
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| T |
1953576 |
agtgtcctccaaatgatctatccaatcatgtatcataaattgaatccaagctgctgctaacacattgaattgtttcccattgtccttgaacgtttttctc |
1953477 |
T |
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| Q |
557 |
tctagaagttttgttgccaccaccattgggtctggtttcaacaactgcataaacacaatat |
617 |
Q |
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|| | ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
1953476 |
tccaaaagttttgtggccaccaccattgggtctggtttcaacaactgcacaaaaacaatat |
1953416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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